View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_39 (Length: 238)
Name: NF14118_low_39
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3806620 - 3806399
Alignment:
| Q |
1 |
tgtgaactgggtttgtcaacatgacgatctcatttatcgaatgggtcattttctcaaaattgacctaagacaattgttagtaaagtgggtgaatccagtc |
100 |
Q |
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| T |
3806620 |
tgtgaactgggtt-gtcaacatgacgatctcatttatcgaatgagtcattttctcaaaattgacctaagacaattgttagtaaagtgggtgaatccagtc |
3806522 |
T |
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| Q |
101 |
tcaacaatcagtttaaattgatcatattaaattcctcatcgtccaatcttacaagctcaagaatcaaataggtcaaccacgaataaccaagaattccaaa |
200 |
Q |
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| T |
3806521 |
tcaacaatcagtttaaattgatcatgttaaattcctcgtcgtccaatcttacaagctcaagaatcaaataggtcaaccacgaataaccaagaattccaaa |
3806422 |
T |
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| Q |
201 |
ccaccaattgcaccagacaactg |
223 |
Q |
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| T |
3806421 |
ccaccaattgcaccagacaactg |
3806399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 42839093 - 42839034
Alignment:
| Q |
117 |
attgatcatattaaattcctcatcgtccaatcttacaagctcaagaatcaaataggtcaa |
176 |
Q |
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| T |
42839093 |
attgatcatgttcaaatcctcatcatccaatcttacaaactcaagagtcaaattggtcaa |
42839034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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