View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14118_low_4 (Length: 588)
Name: NF14118_low_4
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Original strand, 20623993 - 20624550
Alignment:
| Q |
11 |
aagcaaagggtcgagagttagaaaacttattcaatgaaaagccatttagttgctattaaagtgactgcaccaattttcaaatatagtgacattttgattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20623993 |
aagcaaagggtcgagagttagaaaacttattcaacgaaaagccatttatttgctattaaagtgactgcaccaattttcaaatatagtgacattttgattt |
20624092 |
T |
|
| Q |
111 |
cacannnnnnnnaaaattcctttttggatagaatttctacaatacatttttctgattaaaattttggcttcatcatccattatttcagttttagatagtt |
210 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20624093 |
cacattttttttataattcctttttggatagaatttctacaatacatttttctgattaaaattttggcttcatcatccattatttcagttttagatagtt |
20624192 |
T |
|
| Q |
211 |
tgtgcttgcaggctctcacactctctttcataagattatgtgtttgaaatatcttaatcgaaaagcatatttgataaatttcaggagaagatgaatgtag |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20624193 |
tgtgcctgcaggctctcacactctctttcataagattatgt--ttgaaatatattaatcgaaaagcatatttgataaatttcaggagaagatgaatgtag |
20624290 |
T |
|
| Q |
311 |
cttcagaggaacaggaagactggagctgatgaaaaatgagatcaagtataatgcatcgttttctagctatggtccaagaaaactttggcccagtgtatca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
20624291 |
cttcagaggaacaggaagactggagctgatgaaaaatgagatcaagtataatgcatcgttttctagctatggtccaagaaacctatggcctagtgtatca |
20624390 |
T |
|
| Q |
411 |
aattatgtccttcaagtttcatcgccagatgatccgcaatcaccagttgctttcctctacttcctagattctggtggtggttcttatccagaagtcatat |
510 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20624391 |
aattatgttcttcaagtttcctcgccagatgatccgcaatcaccagttgctttcctctacttcctagattctggtggtggttcctatccagaagtcatat |
20624490 |
T |
|
| Q |
511 |
ccagtggccaagcagaatggtttctaaagaaatctgaagaaattaatgctgactctaggt |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20624491 |
ccagtggccaagcagaatggtttctaaagaaatctgaagaaattaatgctgactctaggt |
20624550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University