View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_40 (Length: 237)
Name: NF14118_low_40
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 29297191 - 29297000
Alignment:
| Q |
1 |
gatcactttggtagttacaagttattgactatgttggctt-gtggcatcttttattcaattgtatggtcccataaagcatatagtataagaggttggcaa |
99 |
Q |
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| T |
29297191 |
gatcactttggtagttacaagttattgactatgttggctttgtggcatcttttattcaattgtatggtcccataaagcatatagtataagaggttggcaa |
29297092 |
T |
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| Q |
100 |
aaaggaatagaactgtggcactttctggtgtgtacagtgaattattttaggcacataataattgcattatatttacttggtaattaccataa |
191 |
Q |
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| T |
29297091 |
aaaggaatagaactgtggcactttctggtgtgtacagtgaattattttaggcacataataattgcattatatttacttggtaattaccataa |
29297000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 29305907 - 29305722
Alignment:
| Q |
9 |
tggtagttacaagttattgactatgttggcttgtggcatcttttattcaattgtatggtcccataaagcata-tagtataagaggttggcaaaaaggaat |
107 |
Q |
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||||||||||||||| ||||| ||||| |||| ||||||||| |||||| |||||| | |||||||| || |||||||||||||| |||||||| |
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| T |
29305907 |
tggtagttacaagttcttgacaatgtt------tggcttcttttattgaattgtctggtccaacaaagcataataacataagaggttggcacaaaggaat |
29305814 |
T |
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| Q |
108 |
agaactgtggcactttctggtgtgtacagtgaattattttaggcacataataattgcattatatttacttggtaattaccataatcattatat |
200 |
Q |
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| T |
29305813 |
agaactgtagcactttctggtgtctaaagtgaaat-ttttagtcacataataattgcatgatttttacttggtaattaccataatcattatat |
29305722 |
T |
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