View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_42 (Length: 237)
Name: NF14118_low_42
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 53096052 - 53096272
Alignment:
| Q |
11 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
110 |
Q |
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| T |
53096052 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
53096151 |
T |
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| Q |
111 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccacactagcagaatgaactgttc |
210 |
Q |
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| T |
53096152 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
53096251 |
T |
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| Q |
211 |
caacatcaaaactatttccat |
231 |
Q |
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| T |
53096252 |
caacatcaaaactatttccat |
53096272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 1369483 - 1369435
Alignment:
| Q |
183 |
atgtccacactagcagaatgaactgttccaacatcaaaactatttccat |
231 |
Q |
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| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccat |
1369435 |
T |
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