View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_low_5 (Length: 579)

Name: NF14118_low_5
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_low_5
NF14118_low_5
[»] chr7 (7 HSPs)
chr7 (18-569)||(48074229-48074780)
chr7 (23-105)||(48091783-48091865)
chr7 (264-407)||(48091444-48091587)
chr7 (322-407)||(48100352-48100437)
chr7 (18-69)||(48101543-48101594)
chr7 (317-362)||(1807295-1807340)
chr7 (18-74)||(1808054-1808110)
[»] chr4 (2 HSPs)
chr4 (271-407)||(6343051-6343187)
chr4 (18-136)||(6342786-6342904)
[»] chr1 (4 HSPs)
chr1 (267-407)||(29769698-29769838)
chr1 (18-77)||(35372239-35372298)
chr1 (18-77)||(35377888-35377947)
chr1 (18-73)||(35354978-35355033)
[»] chr6 (1 HSPs)
chr6 (18-78)||(7387514-7387574)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 48074780 - 48074229
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggactcagatatggtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48074780 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggactcagatatggtaa 48074681  T
Q  118 tgtgggttgtgatccaattcgctcacctacgtgcattaatcaattatttatagtaactatatgtatataattaa---atttatcaatgattaaatcaagt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  48074680 tgtgggttgtgatccaattcgctcacctacgtgcattaatcaattatttatagtaactatatgtatataattaattaatttatcaatgattaaatcaagt 48074581  T
Q  215 ttagttagtatatgtatatatgtaagtataaaaaatgaatgaattatatactgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48074580 ttagttagtatatgtatatatgtaagtataaaaaatgaatgaattatatactgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacg 48074481  T
Q  315 gtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcaccnnnnnnn 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  48074480 gtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaaca 48074381  T
Q  415 nnnnntgctcgagcctcaacttgtggaacaacagtgttgaaatttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgttttggt 514  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48074380 aaaaatgctcgagcctcaacttgtggaacaacagtgttgaaatttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgttttggt 48074281  T
Q  515 ccatggatattgga-tagtgcctctaaacaaattaatggagagagactaccctttg 569  Q
    |||||||||||||| |||||||||||||||    ||||||||||||||||||||||    
T  48074280 ccatggatattggattagtgcctctaaaca----aatggagagagactaccctttg 48074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 48091865 - 48091783
Alignment:
Q  23 attccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggact 105  Q
    ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48091865 attccggtatcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggact 48091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 407
Target Start/End: Complemental strand, 48091587 - 48091444
Alignment:
Q  264 actgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtg 363  Q
    |||||| | |||||| ||||||  |||||| ||||| ||||| ||||  |   |||||||||||||||||||||||||   || |||||| ||||||||     
T  48091587 actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagta 48091488  T
Q  364 gttgctaagtagttattgttgccattgtcaacaagtgaatcacc 407  Q
    ||||||||||| |||||||| ||||| |||||||| ||||||||    
T  48091487 gttgctaagtaattattgttaccattatcaacaagagaatcacc 48091444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 48100437 - 48100352
Alignment:
Q  322 ggataatcaatgccataagggtaagaatcagcacgagcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcacc 407  Q
    ||||||||||| ||||||||   ||||||||| | |||||| ||| | || || || ||||||||| |||||||||||||||||||    
T  48100437 ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcacc 48100352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 48101594 - 48101543
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggc 69  Q
    |||||| ||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  48101594 attgaactccagtatcgttgagaatgccaattccagctgaagcaaaattggc 48101543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 1807340 - 1807295
Alignment:
Q  317 gagttggataatcaatgccataagggtaagaatcagcacgagcagt 362  Q
    |||||||||||||||| ||||||||   ||||||||||||||||||    
T  1807340 gagttggataatcaattccataaggaggagaatcagcacgagcagt 1807295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 1808110 - 1808054
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaa 74  Q
    |||||| ||| |||||||| || |||||||||||||| ||| | |||||||||||||    
T  1808110 attgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaa 1808054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 6343051 - 6343187
Alignment:
Q  271 aggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggttgcta 370  Q
    ||||||||||||||||||||||||||||| || ||||  || |  |||||| || ||||||| |||||||| || ||||||||||||||||| || ||||    
T  6343051 aggtcaggcatgttgaggccattggagaaacgaccagaagctctatgagtttgagaatcaattccataaggatatgaatcagcacgagcagtagtggcta 6343150  T
Q  371 agtagttattgttgccattgtcaacaagtgaatcacc 407  Q
     | ||||||| || ||||| || ||||| ||||||||    
T  6343151 ggaagttattatttccattatccacaagagaatcacc 6343187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 6342786 - 6342904
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggactcagatatggtaa 117  Q
    |||||| |||||| ||||||||||||||||| ||||||||||| || || |||||||  || | |  ||| ||||  || || ||||||| |||||||||    
T  6342786 attgaactccagtgtcattgagaattccaatcccagcagaagcaaagttagcaccaataagcaacctctcaccatcaagctctggactcaaatatggtaa 6342885  T
Q  118 tgtgggttgtgatccaatt 136  Q
    ||| |||| ||| ||||||    
T  6342886 tgtaggttctgacccaatt 6342904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 407
Target Start/End: Original strand, 29769698 - 29769838
Alignment:
Q  267 gataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggtt 366  Q
    |||||||||||| | |||||  |||||||||||||| || |||| ||| |||   |||||||| |||||||||||   ||| || ||||| || ||||||    
T  29769698 gataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgatgccataaggaggagagtcggcacgtgccgtggtt 29769797  T
Q  367 gctaagtagttattgttgccattgtcaacaagtgaatcacc 407  Q
       || || |||||||||||| ||||||||||||| |||||    
T  29769798 agcaaataattattgttgccactgtcaacaagtgagtcacc 29769838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 35372239 - 35372298
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaacta 77  Q
    |||||||||| |||||||| ||||||||||  || |||||||| ||||||||||||||||    
T  35372239 attgaattcctgtatcattaagaattccaacgcccgcagaagcaaaattggcaccaacta 35372298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 35377888 - 35377947
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaacta 77  Q
    |||||| |||||||||||||||||||||||| || || || || ||||||||||||||||    
T  35377888 attgaaatccagtatcattgagaattccaatacccgcggatgcaaaattggcaccaacta 35377947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 35354978 - 35355033
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcacca 73  Q
    |||||| |||||| ||||||||||||||||| || |||||||| || |||||||||    
T  35354978 attgaaatccagtgtcattgagaattccaatgccggcagaagcaaagttggcacca 35355033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 7387514 - 7387574
Alignment:
Q  18 attgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactag 78  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  7387514 attgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactag 7387574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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