View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_8 (Length: 499)
Name: NF14118_low_8
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 32285520 - 32285027
Alignment:
| Q |
1 |
tattagtatctacacattggtattgtgtcgggtgtccatgtctctgtcagtgtttcatagatgatatgccatgttctaagggattggtct---------- |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32285520 |
tattagtatctacacattggtattgtgtcgggtgtccatgtctctgtcagtgtttcatagatgatatgccatgttctaagggattggtcaatgattggtc |
32285421 |
T |
|
| Q |
91 |
-tgatggaaatctgaataaggaacacaaaatatatgcaagacctcaacatatgnnnnnnnnntcttttatatattttagaacataaattttgattttgat |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
32285420 |
ctgatggaaatctgaataaggaacacaaaatatatgcaagacctcaacatatgaaaaaaaaatcttttagatattttagaacataaattttgattttgat |
32285321 |
T |
|
| Q |
190 |
agagcacaaatttgatttcattatttgacagttatcaaggactcactcttctaaaagtttaagcttttaagtttaaggttttaaagttctaaaacaatga |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32285320 |
agagcacaaatttgatttcattatttgacagttatcaaggactcactcttctaaaagtttaagcttttaagtttaaggttttaaagttctaaaacaatga |
32285221 |
T |
|
| Q |
290 |
agagacaaaatatgaaccattcgtatttgattctttatcaatctgtgagttctaggaagttgaaaatggagctgcagttgcttctgtgacagaaatttca |
389 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32285220 |
agagacaaaatatgaaccatttgtatttgattctttatcaatctgtgagttctaggaagttgaaaatggagctgcagttgcttctgtgacagaaatttca |
32285121 |
T |
|
| Q |
390 |
gaagttcagcaaaaagttgttggagaagttgaccaagaaacagaagcatcccatccaagagttttcctccttggggaaaatcggtgggaagaac |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32285120 |
gaagttcagcaaaaagttgttggagaagttgaccaagaaacagaagcatcccatccaagagttttcctccttggggaaaatcggtgggaagaac |
32285027 |
T |
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