View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14119_low_1 (Length: 676)

Name: NF14119_low_1
Description: NF14119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14119_low_1
NF14119_low_1
[»] chr3 (8 HSPs)
chr3 (1-669)||(47248796-47249463)
chr3 (424-654)||(47242366-47242596)
chr3 (218-325)||(47253966-47254073)
chr3 (223-311)||(47242723-47242811)
chr3 (99-173)||(24778609-24778682)
chr3 (98-174)||(48532165-48532241)
chr3 (98-173)||(40991639-40991713)
chr3 (130-178)||(37083287-37083335)
[»] chr4 (7 HSPs)
chr4 (67-174)||(22420716-22420822)
chr4 (98-174)||(25575032-25575107)
chr4 (68-147)||(29209201-29209279)
chr4 (129-178)||(15665339-15665388)
chr4 (129-174)||(48174092-48174137)
chr4 (99-163)||(37042674-37042737)
chr4 (98-174)||(45209204-45209279)
[»] chr6 (3 HSPs)
chr6 (68-126)||(3963967-3964025)
chr6 (20-65)||(35069524-35069569)
chr6 (98-174)||(28085584-28085659)
[»] chr1 (5 HSPs)
chr1 (67-163)||(30396739-30396834)
chr1 (67-126)||(15577595-15577654)
chr1 (99-173)||(21769711-21769784)
chr1 (98-163)||(29128991-29129056)
chr1 (98-174)||(41560437-41560512)
[»] chr8 (4 HSPs)
chr8 (98-173)||(45419443-45419517)
chr8 (69-162)||(23492213-23492305)
chr8 (82-162)||(25117477-25117556)
chr8 (98-174)||(30198265-30198340)
[»] chr7 (5 HSPs)
chr7 (100-174)||(1011256-1011329)
chr7 (67-145)||(22174177-22174254)
chr7 (68-174)||(40008430-40008535)
chr7 (98-174)||(2885721-2885796)
chr7 (98-174)||(37618153-37618228)
[»] chr5 (2 HSPs)
chr5 (30-68)||(43301001-43301039)
chr5 (20-64)||(34736440-34736484)
[»] chr2 (1 HSPs)
chr2 (98-174)||(9556368-9556443)


Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 47249463 - 47248796
Alignment:
Q  1 tcaaacaatttcaattaatttatgtcagcatataagctcaaataagacaatacaaacatgcccttggagattaatgaatttgatagagataagatagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  47249463 tcaaacaatttcaattaatttatgtcagcatataagctcaaataagccaatacaaacatgcccttagagattaatgaatttgatagagataagatggatg 47249364  T
Q  101 atagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgttagttgttgctatgtcattttgcttaa 200  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249363 atagaacattttggtattgtttgatcaa-tgtagcagaccccacttagtgtgatgaggcttggcggttgttgttagttgttgctatgtcattttgcttaa 47249265  T
Q  201 gcatttaaatttatctcttttaaatatgcagaaagtatgaagaaattaccccaccaaaggcagtggatttctgccaaattactgataacacctatgacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249264 gcatttaaatttatctcttttaaatatgcagaaagtatgaagaaattaccccaccaaaggcagtggatttctgccaaattactgataacacctatgacct 47249165  T
Q  301 ggaagaggtaaatatcctattcatgtcattgctcttgaatcaaaatttgtacatttcatttcttactgtgttgctttgtttctcatgtatgttgttgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47249164 ggaagaggtaaatatcctattcatgtcattgctcttgaatcaaaatttgtacattttatttcttactgtgttgctttgtttctcatgtatgttgttgtct 47249065  T
Q  401 tcctgctaccgtaggtattaaaaatggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249064 tcctgctaccgtaggtattaaaaatggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggaca 47248965  T
Q  501 ttttttactgtaaagttgaatatataaatccttgctgaaatgaaataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggttt 600  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248964 tttattactgtaaagttgaatatataaatccttgctgaaatgaaataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggttt 47248865  T
Q  601 attgggattgcttgtgagaatcgaaaggttagttgaaatattgttttattactattagttgatgatgtc 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248864 attgggattgcttgtgagaatcgaaaggttagttgaaatattgttttattactattagttgatgatgtc 47248796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 424 - 654
Target Start/End: Complemental strand, 47242596 - 47242366
Alignment:
Q  424 atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacattttttactgtaaagttgaatat 523  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||||||||||| || |||||||| ||||||  |||||||||| ||| || ||||||||    
T  47242596 atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatat 47242497  T
Q  524 ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggtttattgggattgcttgtgagaatc 622  Q
     |||| ||||| |||||||||  |||||||||| |   ||||||| | ||  || | || || | ||||||||| ||| |||||||||||| ||||||||    
T  47242496 ctaaagccttgttgaaatgaagttaattggactaattctgtttattttcacttgctgtgatt-catttcaggagttttgttgggattgcttctgagaatc 47242398  T
Q  623 gaaaggttagttgaaatattgttttattacta 654  Q
     |||||| | ||||| | ||||||||||||||    
T  47242397 aaaaggtaatttgaattgttgttttattacta 47242366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 47254073 - 47253966
Alignment:
Q  218 ttttaaatatgcagaaagtatgaagaaattaccccaccaaaggcagtggatttctgccaaattactgataacacctatgacctggaagaggtaaatatcc 317  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| || ||||||||||| |||||||||||||||||||| ||| || |||||||||||     
T  47254073 ttttaaatttgcagaaagtatgaagaaatctccccaccaaaggctgttgatttctgccagattactgataacacctatgagctgaaacaggtaaatatca 47253974  T
Q  318 tattcatg 325  Q
    ||||||||    
T  47253973 tattcatg 47253966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 47242811 - 47242723
Alignment:
Q  223 aatatgcagaaagtatgaagaaattaccccaccaaaggcagtggatttctgccaaattactgataacacctatgacctggaagaggtaa 311  Q
    ||||||||| |||||||||||||| ||||||||||||||  | |||||||||||||| ||||||||||| ||||| || || |||||||    
T  47242811 aatatgcaggaagtatgaagaaatcaccccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaa 47242723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 24778682 - 24778609
Alignment:
Q  99 tgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgt 173  Q
    |||||||||||| ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||| ||||||||    
T  24778682 tgatagaacattatggtgtaatttgatcca-tgtagccgaccccacttagtgggataaggcttggctgttgttgt 24778609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 48532165 - 48532241
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||| | ||| ||  ||||||| |||||||| |||||||||||||| ||| ||||||||  |||||||||    
T  48532165 atgatagaacactatggcgtcatttgatccaatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 48532241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 40991639 - 40991713
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgt 173  Q
    ||||||||||||| ||||||  ||||||| | |||||| |||||||||||||| ||| || |||||| ||||||||    
T  40991639 atgatagaacattatggtgtaatttgatcca-tgtagctgaccccacttagtgagataagacttggctgttgttgt 40991713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 37083335 - 37083287
Alignment:
Q  130 tgtagcagaccccacttagtgtgatgaggcttggcggttgttgttagtt 178  Q
    |||||| |||||||||||||| ||| ||||||||  |||||||||||||    
T  37083335 tgtagccgaccccacttagtgggataaggcttggttgttgttgttagtt 37083287  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 22420822 - 22420716
Alignment:
Q  67 gagattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcgg 166  Q
    ||||||||||| || |||||||||| | || |||||||| |||| ||| |||||||||||  ||||||  |||||||||||||| ||| ||||||||  |    
T  22420822 gagattaatgagttggatagagatatggtaaatgatagagcattatggcgttgtttgatc-tatgtagttgaccccacttagtgggataaggcttggttg 22420724  T
Q  167 ttgttgtt 174  Q
    ||||||||    
T  22420723 ttgttgtt 22420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 25575032 - 25575107
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||||| ||||||  ||||||| | |||||||||||||| |||||| ||| ||||||||  |||||||||    
T  25575032 atgatagaacattgtggtgtaatttgatcca-tgtagcagaccccatttagtgggataaggcttggttgttgttgtt 25575107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 29209279 - 29209201
Alignment:
Q  68 agattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccactta 147  Q
    |||||||||| || |||||| ||| | || |||||||| |||| ||| ||||||||||| |||||||| |||||||||||    
T  29209279 agattaatgagttggatagaaatatggtatatgatagagcattatggcgttgtttgatc-aatgtagccgaccccactta 29209201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 15665339 - 15665388
Alignment:
Q  129 atgtagcagaccccacttagtgtgatgaggcttggcggttgttgttagtt 178  Q
    ||||||| |||||||||||||| ||| ||||||||  |||||||||||||    
T  15665339 atgtagctgaccccacttagtgggataaggcttggttgttgttgttagtt 15665388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 48174137 - 48174092
Alignment:
Q  129 atgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||||    
T  48174137 atgtagcagaccccacttagtgggataaggcttggttgttgttgtt 48174092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 37042737 - 37042674
Alignment:
Q  99 tgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttgg 163  Q
    |||||||||||| |||||| ||||||||  ||||||| ||||| |||||||| ||| ||||||||    
T  37042737 tgatagaacattatggtgtcgtttgatc-catgtagccgacccgacttagtgggataaggcttgg 37042674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 45209279 - 45209204
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||| ||| ||| || |||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  45209279 atgatagaatattatggcgtagtttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 45209204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 3963967 - 3964025
Alignment:
Q  68 agattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatc 126  Q
    |||||||||| ||||||||||||| |||| |||||||||||||  || |||||||||||    
T  3963967 agattaatgagtttgatagagatacgatatatgatagaacattacggcgttgtttgatc 3964025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 35069569 - 35069524
Alignment:
Q  20 ttatgtcagcatataagctcaaataagacaatacaaacatgccctt 65  Q
    ||||||||| | ||||||||||||||| ||||||||||| ||||||    
T  35069569 ttatgtcagtagataagctcaaataagccaatacaaacaggccctt 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 28085584 - 28085659
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||| | ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  28085584 atgatagaacactatggtgtcatttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 28085659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 30396834 - 30396739
Alignment:
Q  67 gagattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttgg 163  Q
    ||||||||||| || ||||| |||| |||| ||||||||||||| |||||  ||||||||   ||||||  ||||||||||||| ||| ||||||||    
T  30396834 gagattaatgagttggatagggatacgatatatgatagaacattatggtggcgtttgatc-cgtgtagccaaccccacttagtgggataaggcttgg 30396739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 15577595 - 15577654
Alignment:
Q  67 gagattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatc 126  Q
    ||||||||||| || |||||||||| ||||  |||||||||||| | |||||||||||||    
T  15577595 gagattaatgagttggatagagatatgatatttgatagaacattattgtgttgtttgatc 15577654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 21769784 - 21769711
Alignment:
Q  99 tgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgt 173  Q
    |||||||||||| ||| ||  ||||||| | |||||| |||||||||||||||||| ||||||||  ||||||||    
T  21769784 tgatagaacattatggcgtaatttgatcca-tgtagccgaccccacttagtgtgataaggcttggttgttgttgt 21769711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 29128991 - 29129056
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttgg 163  Q
    ||||||||||||| ||||||  | |||||  ||||||| |||||||||||||| ||| ||||||||    
T  29128991 atgatagaacattatggtgtaatatgatcccatgtagccgaccccacttagtgagataaggcttgg 29129056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 41560437 - 41560512
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||||| ||| ||  ||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  41560437 atgatagaacattatggcgtaatttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 41560512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 45419443 - 45419517
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgt 173  Q
    ||||||||||||| ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||  ||||||||    
T  45419443 atgatagaacattatggtgtaatttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgt 45419517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 23492213 - 23492305
Alignment:
Q  69 gattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttg 162  Q
    ||||||||| || |||||| ||| |||| ||||||||||| | ||||||  ||| ||| | |||||| |||||||||||||| ||| |||||||    
T  23492213 gattaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatcca-tgtagccgaccccacttagtgagataaggcttg 23492305  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 25117477 - 25117556
Alignment:
Q  82 gatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttg 162  Q
    |||||||| | |||| ||||||||||||| ||   |||||||||| | |||||||||||||| | |||| |||||||||||    
T  25117477 gatagagaaatgatatatgatagaacattatgacattgtttgatcca-tgtagcagaccccattaagtgggatgaggcttg 25117556  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 30198340 - 30198265
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||| ||| |||||| |||||||| | ||| || |||||||||||||| ||| ||||||||  |||||||||    
T  30198340 atgatagaatattatggtgtagtttgatcta-tgttgccgaccccacttagtgggataaggcttggttgttgttgtt 30198265  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 1011256 - 1011329
Alignment:
Q  100 gatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||| ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  1011256 gatagaacattatggtgtaatttgatcta-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 1011329  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 22174177 - 22174254
Alignment:
Q  67 gagattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccact 145  Q
    |||||||||||||| |||||| ||| | ||  |||||||||||| ||| |||||||||||  ||||||| |||||||||    
T  22174177 gagattaatgaattagatagaaatatggtatgtgatagaacattatggcgttgtttgatc-catgtagccgaccccact 22174254  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 40008535 - 40008430
Alignment:
Q  68 agattaatgaatttgatagagataagatagatgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggt 167  Q
    |||||||||| || |||||||| | |||| ||||||||||||| ||  |||||||||||  ||||||| |||| |||||| || ||| || |||||  ||    
T  40008535 agattaatgagttggatagagacatgatatatgatagaacattatgtcgttgtttgatc-catgtagctgacctcacttaatgagataagacttggttgt 40008437  T
Q  168 tgttgtt 174  Q
    |||||||    
T  40008436 tgttgtt 40008430  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 2885796 - 2885721
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||| | ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  2885796 atgatagaacactatggtgtaatttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 2885721  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 37618153 - 37618228
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    ||||||||||| | ||||||  ||||||| | |||||| |||||||||||||| ||| ||||||||  |||||||||    
T  37618153 atgatagaacactatggtgtcatttgatcca-tgtagccgaccccacttagtgggataaggcttggttgttgttgtt 37618228  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 43301001 - 43301039
Alignment:
Q  30 atataagctcaaataagacaatacaaacatgcccttgga 68  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  43301001 atataagctcaaataagccaatccaaacatgcccttgga 43301039  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 34736484 - 34736440
Alignment:
Q  20 ttatgtcagcatataagctcaaataagacaatacaaacatgccct 64  Q
    |||||||| || ||||||||||||||| |||| ||||||||||||    
T  34736484 ttatgtcaccagataagctcaaataagtcaatccaaacatgccct 34736440  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 9556443 - 9556368
Alignment:
Q  98 atgatagaacattttggtgttgtttgatcaaatgtagcagaccccacttagtgtgatgaggcttggcggttgttgtt 174  Q
    |||||||||||||  |||||  |||||| | ||||||| ||| |||||||||| ||||||||||||  |||||||||    
T  9556443 atgatagaacattagggtgtaatttgat-acatgtagccgactccacttagtgggatgaggcttggttgttgttgtt 9556368  T

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