View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14119_low_2 (Length: 587)
Name: NF14119_low_2
Description: NF14119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14119_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 45725811 - 45725245
Alignment:
| Q |
8 |
cgaagaaaatagatgaaaatagcttaaaattgtatgaaaacaacttttataaaagtaacgcaaactataagctataaactgcaaaataagctgtttatcc |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725811 |
cgaacaaaatagatgaaaatagcttaaaattgt-tgaaaacaacttttataaaagtaacgcaaactataagctataaactgcaaaataagctgtttatcc |
45725713 |
T |
|
| Q |
108 |
ataatcttaccttaaagtcattgtttataatcatgcctatggcacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725712 |
ataatcttaccttaaagtcattgtttataatcatgcctatggtacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaata |
45725613 |
T |
|
| Q |
208 |
agtgatgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725612 |
agtgatgggttgtttaatcttcttataaaccaactcaaccgcaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgca |
45725513 |
T |
|
| Q |
308 |
tattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacagcagcaccaacagtaagcnnnnnnncggcgtttacggtaaatg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45725512 |
tattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagcaccaacagtaagcaaaaaaacggcgtttacggtaaatg |
45725413 |
T |
|
| Q |
408 |
ctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaaaccaagctgagatgctataattaaggaagaagtggaaaccggaagccgagcaac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725412 |
ctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaaaccaagctgagatgctataattaaggaagaagtggaaaccggaagccgagcaac |
45725313 |
T |
|
| Q |
508 |
gccatatgcgtagagataatcatcaagaccggtgaggattccgacaaaggcggctgcgaagaaaatag |
575 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45725312 |
gccatatgcgtagagataatcgtcaagaccggtgaggattccgacaaaggcggctgcaaagaaaatag |
45725245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 110 - 575
Target Start/End: Complemental strand, 45729899 - 45729434
Alignment:
| Q |
110 |
aatcttaccttaaagtcattgtttataatcatgcctatggcacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaataag |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45729899 |
aatcttaccttaaagtcattgtttgcaatcatgcctatggcacagaagagagtggcaaacatgcacgtaacgaactgaaattccataacaaaagaataag |
45729800 |
T |
|
| Q |
210 |
tgatgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcata |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
45729799 |
tgacgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaata |
45729700 |
T |
|
| Q |
310 |
ttgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacagcagcaccaacagtaagcnnnnnnncggcgtttacggtaaatgct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||| ||||| ||| |
|
|
| T |
45729699 |
ttgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagctccaaccgtaagcaaaacaacggcgtttacagtaaaagct |
45729600 |
T |
|
| Q |
410 |
gtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaaaccaagctgagatgctataattaaggaagaagtggaaaccggaagccgagcaacgc |
509 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
45729599 |
gtaaatttctctttcacaataagaaaagcgaaaaacgcagtgaaaccaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgc |
45729500 |
T |
|
| Q |
510 |
catatgcgtagagataatcatcaagaccggtgaggattccgacaaaggcggctgcgaagaaaatag |
575 |
Q |
| |
|
|||||||| ||||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
45729499 |
catatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaatag |
45729434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 45730025 - 45729936
Alignment:
| Q |
13 |
aaaatagatgaaaatagcttaaaa-ttgtatgaaaacaac----ttttataaaagtaacgcaaactataagctataaactgcaaaataag |
97 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
45730025 |
aaaatatatgaaaatagcttaaaacttgtacgaaaacaacaactttttataaaagtaactcaaactataagctataaactgcaaagtaag |
45729936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 27353012 - 27352909
Alignment:
| Q |
172 |
gcacataacgaactgaaattccataacaagagaataagtgatgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaat |
271 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||| || ||||||| |||| |||||||||||||| | | | || ||||||||||||||||| |
|
|
| T |
27353012 |
gcacataacaagctgaatctccataacaagagaataagtaataacttgtttactctttttataaaccaactccaacaacggtaaaacaaatccatacaaa |
27352913 |
T |
|
| Q |
272 |
gcag |
275 |
Q |
| |
|
|||| |
|
|
| T |
27352912 |
gcag |
27352909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University