View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14119_low_5 (Length: 234)
Name: NF14119_low_5
Description: NF14119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14119_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 11749166 - 11748978
Alignment:
| Q |
2 |
ttgctttgtgattcgagaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacac |
101 |
Q |
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| T |
11749166 |
ttgctttgcgattcaggaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacat |
11749067 |
T |
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| Q |
102 |
aggaagaattcactgcatattttggagtgttggactcttccacattagaggtatttccatgaaatttttattgctatggtggtagtaaa |
190 |
Q |
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| T |
11749066 |
aggaagaattcactgcatattttggagtgttggacacttccacggtagaggtatgtccatgaaatttttattgctatggtggtagtaaa |
11748978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 52011351 - 52011204
Alignment:
| Q |
8 |
tgtgattcgagaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaag |
107 |
Q |
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| T |
52011351 |
tgtgattcgagaaaaatgaattgtcgctttcttgaactacttctgagtgggtttcctactcatattcggcttaaagattgctcctggttgacagaggaag |
52011252 |
T |
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| Q |
108 |
aattcactgcatattttggagtgttggactcttccacattagaggtat |
155 |
Q |
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| T |
52011251 |
aattcactaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 52001492 - 52001339
Alignment:
| Q |
2 |
ttgctttgtgattcgagaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacac |
101 |
Q |
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|||||||||||||| |||||||||||||||| || ||||||| ||||||||||||| | ||| | | || |||||||||| ||||| ||| ||||| |
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| T |
52001492 |
ttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacag |
52001393 |
T |
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| Q |
102 |
aggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
155 |
Q |
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| T |
52001392 |
aggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
52001339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 51988159 - 51988294
Alignment:
| Q |
20 |
aaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcat |
119 |
Q |
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| T |
51988159 |
aaaatgaatggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaagattgcttctggttgacagaggaagaatttataaaat |
51988258 |
T |
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| Q |
120 |
attttggagtgttggactcttccacattagaggtat |
155 |
Q |
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| T |
51988259 |
attttggaacattggacacttccatattagaggtat |
51988294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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