View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411R-Insertion-1 (Length: 1099)
Name: NF1411R-Insertion-1
Description: NF1411R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411R-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 643 - 845
Target Start/End: Complemental strand, 30101367 - 30101165
Alignment:
| Q |
643 |
ggatgaaaagacctatttaacctaaattaaataataatagtctggttttgttgaataataacaatgttcatgttcacgggtaaattaaggtctgaaacca |
742 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30101367 |
ggatcaaaagacctatttaacctaaattaaataataatagtctggttttgttgaataataacaatgttcatgttcacgggtaaattaaggtctgaaacca |
30101268 |
T |
|
| Q |
743 |
tgtcacgttccaatcctatctccttactcttcacatgaaacaaaatttcaaattataaaagaataatttttagtataaagatttgaccacatctttttaa |
842 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30101267 |
tgtcacgttccaatcctatctccttactcttcacatgaaaccaaatttcaaattataaaataataatttttagtataaagatttgaccacatctttttaa |
30101168 |
T |
|
| Q |
843 |
cac |
845 |
Q |
| |
|
||| |
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|
| T |
30101167 |
cac |
30101165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 187 - 470
Target Start/End: Complemental strand, 30101877 - 30101607
Alignment:
| Q |
187 |
aaattcacatttttaataagtataagtaaagtgtgtggagtttaaactccaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg |
286 |
Q |
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|||||||||||||||||||| |||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30101877 |
aaattcacatttttaataagaataagtgaggtgtgtggagtttaaattctaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg |
30101778 |
T |
|
| Q |
287 |
ttacaagtatttattcacatcatttaaaaatacactcaacatatattatttgattcatttttcttattaccnnnnnnnnnnnnaaatacgtgtgtctaaa |
386 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30101777 |
ttacaagtatttatgcatatcatttaaaaatacactcaacatatattatttgattcatttttcttattaccttttttttttttaaatacgt--------- |
30101687 |
T |
|
| Q |
387 |
tacggtgtctaaatatttgtgaccaatcaaattttctatttaccccaatctcatgtaggctgcatgcatcatcaaagggtgttt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30101686 |
----gtgtctaaatatttgtgaccaatcaaattttctatttaccccaatcacatgtaggctgcatgcatcatcaaagggtgttt |
30101607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 30102083 - 30101947
Alignment:
| Q |
24 |
tatcaaatgagatatgaatgaatctttcgtttcttttcgcaagaagatatgaatgaatcttcaatatcaaatgagacagtaatccgtataatcggagtat |
123 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30102083 |
tatcaaataagatatcaatgaatcttttgtttcttttcgcaagaagatatgaatgaatcttcaatatcaaatgagacaggaatccgtataatcggagtat |
30101984 |
T |
|
| Q |
124 |
cttaata-ttatttttttcgagcaagtgtcacaagta |
159 |
Q |
| |
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||||||| || |||||||||||||||||||||||||| |
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|
| T |
30101983 |
cttaatatttttttttttcgagcaagtgtcacaagta |
30101947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 30101136 - 30101058
Alignment:
| Q |
873 |
ttaaataatatgtattttttaaataatcatataatgtgcattttttgggtga-caaaataatgtgtccactttatattc |
950 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
30101136 |
ttaaataatatgtattttttaaataatcatataatgtgcattttttgtgtgaccaaaataatgtgtccactttatattc |
30101058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 531 - 571
Target Start/End: Complemental strand, 30101546 - 30101506
Alignment:
| Q |
531 |
attcttgtatgttgttttgtaaatctcatgggatcggatca |
571 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30101546 |
attcgtgtatgttgttttgtaaatctcatgggatcggatca |
30101506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 615 - 653
Target Start/End: Original strand, 44933609 - 44933647
Alignment:
| Q |
615 |
ttaatccgatatttttgtcaaacttaaaggatgaaaaga |
653 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |
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| T |
44933609 |
ttaatccgatatttttgtcaaatttaaaggatcaaaaga |
44933647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 615 - 656
Target Start/End: Complemental strand, 30101450 - 30101409
Alignment:
| Q |
615 |
ttaatccgatatttttgtcaaacttaaaggatgaaaagacct |
656 |
Q |
| |
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|||||||||||||||||||||| |||||| || ||||||||| |
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| T |
30101450 |
ttaatccgatatttttgtcaaatttaaagtatcaaaagacct |
30101409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 878 - 918
Target Start/End: Original strand, 14169586 - 14169626
Alignment:
| Q |
878 |
taatatgtattttttaaataatcatataatgtgcatttttt |
918 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| |
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| T |
14169586 |
taatatgtattttttaaataattatatcatgtgcatttttt |
14169626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 615 - 653
Target Start/End: Complemental strand, 7119172 - 7119134
Alignment:
| Q |
615 |
ttaatccgatatttttgtcaaacttaaaggatgaaaaga |
653 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
7119172 |
ttaatccgatatttttgtcaaacttaaatgatcaaaaga |
7119134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 645
Target Start/End: Complemental strand, 34444948 - 34444919
Alignment:
| Q |
616 |
taatccgatatttttgtcaaacttaaagga |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
34444948 |
taatccgatatttttgtcaaacttaaagga |
34444919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 874 - 917
Target Start/End: Original strand, 3942629 - 3942672
Alignment:
| Q |
874 |
taaataatatgtattttttaaataatcatataatgtgcattttt |
917 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| |||||| |
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|
| T |
3942629 |
taaataaaatgtattttttaaataatcaaataatgtgtattttt |
3942672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 645
Target Start/End: Complemental strand, 44996770 - 44996741
Alignment:
| Q |
616 |
taatccgatatttttgtcaaacttaaagga |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
44996770 |
taatccgatatttttgtcaaacttaaagga |
44996741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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