View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1411R-Insertion-3 (Length: 767)
Name: NF1411R-Insertion-3
Description: NF1411R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411R-Insertion-3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 9 - 621
Target Start/End: Complemental strand, 40087151 - 40086539
Alignment:
| Q |
9 |
aaatttcaatataaaccatctatacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggcctt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40087151 |
aaatttcaatataaaccatctatacctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggcctt |
40087052 |
T |
|
| Q |
109 |
gtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatccaatcgtccagtgtaatttctcttc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40087051 |
gtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttc |
40086952 |
T |
|
| Q |
209 |
tatatacaagaaataaactatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagat |
308 |
Q |
| |
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|| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40086951 |
tacatataagaaataaactatccatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagat |
40086852 |
T |
|
| Q |
309 |
ttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagt |
408 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40086851 |
ttcaataagaaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagt |
40086752 |
T |
|
| Q |
409 |
tggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagtgaagtaatattatcat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40086751 |
tggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacagtatcagctaattcctcttagagccaatttttcagtgaagtaatattatcat |
40086652 |
T |
|
| Q |
509 |
attaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgag |
608 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40086651 |
attattctgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgag |
40086552 |
T |
|
| Q |
609 |
atcttccacaggt |
621 |
Q |
| |
|
||||||||||||| |
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| T |
40086551 |
atcttccacaggt |
40086539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 9 - 621
Target Start/End: Complemental strand, 40079390 - 40078766
Alignment:
| Q |
9 |
aaatttcaatataaaccatctatacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggcctt |
108 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||| |||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||||| |
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|
| T |
40079390 |
aaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggcctt |
40079291 |
T |
|
| Q |
109 |
gtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatcc-----aatcgtccagtgtaatttc |
203 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||||| ||| | | ||| ||||||||||||||| |
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|
| T |
40079290 |
gtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaatttc |
40079191 |
T |
|
| Q |
204 |
tcttctatatacaagaaataaactatgcatgtgatattatcaatttatcttcttcgatg-------tattaccagtgttgtatttgtgacggctacaaca |
296 |
Q |
| |
|
||||||| ||| |||||| |||||||| ||| ||||||| |||||||||||||||| | ||||||||||| || ||||| || |||||||||| |
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|
| T |
40079190 |
tcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaaca |
40079091 |
T |
|
| Q |
297 |
tgaacaatagatttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtac |
396 |
Q |
| |
|
||||||| | || || |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||| |
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|
| T |
40079090 |
tgaacaaaatatactcgtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtac |
40078991 |
T |
|
| Q |
397 |
ttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagtgaag |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
40078990 |
ttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaattcctcttagagccaatttttccgtgaag |
40078891 |
T |
|
| Q |
497 |
taatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgtaccgcctcgttggaaaaagcgtgcgac |
596 |
Q |
| |
|
||||| |||||||| || ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||| || |
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|
| T |
40078890 |
taatactatcatataaaattgaacttgcgaacaacatttcaggttgcaataccatatagtagttttgaaatgttccaccacgttggaaaaagcgtgccac |
40078791 |
T |
|
| Q |
597 |
agcaaatgcgagatcttccacaggt |
621 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
40078790 |
agcaaatgcaagatcttccacaggt |
40078766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 621
Target Start/End: Complemental strand, 40061266 - 40060644
Alignment:
| Q |
9 |
aaatttcaatataaaccatctatacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggcctt |
108 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
40061266 |
aaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggcctt |
40061167 |
T |
|
| Q |
109 |
gtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaat--------------ccaatcgtccag |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||| || |||| ||||||| |||| |||||| |
|
|
| T |
40061166 |
gtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccag |
40061067 |
T |
|
| Q |
195 |
tgtaatttctcttctatatacaagaaataaactatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgta-tttgtgacggctaca |
293 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||||| ||||||| |
|
|
| T |
40061066 |
tgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctaca |
40060967 |
T |
|
| Q |
294 |
acatgaacaatagat-ttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctcca |
392 |
Q |
| |
|
|||||||||| | || || | || ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
40060966 |
acatgaacaacatatatttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccg |
40060869 |
T |
|
| Q |
393 |
gtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||| ||||||||||||| | | || || |
|
|
| T |
40060868 |
gtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaag- |
40060770 |
T |
|
| Q |
493 |
gaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgtaccgcctcgttggaaaaagcgtg |
592 |
Q |
| |
|
| |||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
40060769 |
--aacaataccat-atagtaaattgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtg |
40060673 |
T |
|
| Q |
593 |
cgacagcaaatgcgagatcttccacaggt |
621 |
Q |
| |
|
| ||||||||||| ||||||||||||||| |
|
|
| T |
40060672 |
ccacagcaaatgcaagatcttccacaggt |
40060644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
74 |
gctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgca |
157 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||| |||||||| |
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|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 431
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
332 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 52548938 - 52548999
Alignment:
| Q |
365 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
426 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
|
|
| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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