View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1411R-Insertion-5 (Length: 563)
Name: NF1411R-Insertion-5
Description: NF1411R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411R-Insertion-5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Complemental strand, 34455532 - 34454981
Alignment:
| Q |
8 |
actcatagtaatgaaaattcggtcatatgaatgctaagagttacaaaatgaaaactccattgatgagaagcttgatgagggcgccacaaaggcaagaagg |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455532 |
actcatagtaatgaaaattcgcccatatgaatgctaaaagttacaaaatgaaaactccattgacgagaagcttgatgagggcgccacaaaggcaagaagg |
34455433 |
T |
|
| Q |
108 |
aggttagaatgttgaaaatccttccttgattgcctcattatgagctctttgaatgctgattattctttgcnnnnnnncttgtcttgcgccacttctctca |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34455432 |
aggttagaatgctgaaaatccttccttgattgcctcattatgagctctttgaatgctgattattctttcctttttttcttgtcttgcgccacttctctca |
34455333 |
T |
|
| Q |
208 |
tcttaattgcaccattgactcatttgtttcctccttgcttcagaacctttatttgcaataattaaacacacaactttaccattccaaacttggaagcttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34455332 |
tcttaattgcaccattgactcatttgtttcctccttgcttcagaacctttatttgcaataattaaacacacaactttaccattccaagtttggaagcttt |
34455233 |
T |
|
| Q |
308 |
aagatgaccttaaaattagggaaaacttaattaagtgtctttgggccaaataatgtaccctttcactttttattacaacataacaaaataactagatata |
407 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
34455232 |
aagatgaccttaaaattagggaagacttaactaagtgtctttgggccaaataatgtaccctttcactttttattacaacataacaatataactag----a |
34455137 |
T |
|
| Q |
408 |
taaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactccaa |
507 |
Q |
| |
|
|||||||||| | ||||||| || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34455136 |
taaaatgggctgcaagagatgcgctccacccctcctccaatggtttgatgcacatgatcattctacccttcatgcttcctagtgtaggtttgaactccaa |
34455037 |
T |
|
| Q |
508 |
gacttttgccaccaattgagttagcgcctccttagctttcttggcccttgcccttg |
563 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455036 |
gaagtttgccaccaattgagttagcgcctccttagctttcttggcccttgcccttg |
34454981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 371 - 551
Target Start/End: Complemental strand, 11475092 - 11474915
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11475092 |
cactttttattacaacataacaagaacaactaaata----aaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccatt |
11474997 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11474996 |
ttatcctccatgctttctagtgtaggtttggactccaagacttttgccaccaattgagttagggcctccttagctttcttgg |
11474915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 365 - 563
Target Start/End: Original strand, 22708442 - 22708637
Alignment:
| Q |
365 |
ccctttcactttttattacaacataacaaaa-taactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatg |
463 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||| |||||||||| |||| || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
22708442 |
cccttacactttttattacaacataacaaaaataactaaata----aaatgggcagcaagatatgcgccccatccatcctccaatggtttgatgcacatg |
22708537 |
T |
|
| Q |
464 |
accattctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttggcccttgcccttg |
563 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
22708538 |
accattttatcctccatgctttctagcgtaggtttgaactccaagacttttgccatcaattgagttagggcctccttaactttcttggtccttgcccttg |
22708637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 371 - 563
Target Start/End: Original strand, 21369248 - 21369437
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| || |||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21369248 |
cactttttattacaacataacaagaacaactaaata----aaatgggcagcaacagatgcgccccacccctcctccaatggtttgatgcacatgaccatt |
21369343 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttggcccttgcccttg |
563 |
Q |
| |
|
|| | ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
21369344 |
ttatcatccatgctttctagtgtaggtttggactccaagacttttgccatcaattgagttagggcctccttagctttcttggtcctcgcccttg |
21369437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 371 - 551
Target Start/End: Complemental strand, 16156483 - 16156306
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| ||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16156483 |
cactttttattacaacataacaagaacaactaaata----aaatgagcagcaagagatgtgccccacccctcctccaatggtttgatgcacatgaccatt |
16156388 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| |||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
16156387 |
ttatcctccatgatttctagtgtaggtttggactccaagactttttccaccaattgagttagggcctccttagctctcttgg |
16156306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 21302408 - 21302585
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21302408 |
cactttttattacaacataacaagaacaactaaata----aaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccatt |
21302503 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21302504 |
ttatcctccatgctttctagtgtaggtttggactccaagacttttgccaccaattgagttagggcctccttagctttcttgg |
21302585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 371 - 563
Target Start/End: Complemental strand, 12639039 - 12638850
Alignment:
| Q |
371 |
cactttttattacaacataacaaaataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattc |
470 |
Q |
| |
|
||||||||||||||||||||||| | | | || ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12639039 |
cactttttattacaacataacaagaacaat---taaataaaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccattt |
12638943 |
T |
|
| Q |
471 |
taccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttggcccttgcccttg |
563 |
Q |
| |
|
|| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
12638942 |
tatcctccatgctttctagtgtcggtttggactccaagacttttgccaccaattgagttagggcctccttagctttcttggtcctcgcccttg |
12638850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 431 - 563
Target Start/End: Complemental strand, 9343839 - 9343707
Alignment:
| Q |
431 |
ccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagtta |
530 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9343839 |
ccccacccctcctccaatggtttgatgcacatgaccattttatcctccatgttttctagtgttggtttgaactccaagacttttgccaccaattgagtta |
9343740 |
T |
|
| Q |
531 |
gcgcctccttagctttcttggcccttgcccttg |
563 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| |
|
|
| T |
9343739 |
ggctctccttagctttcttggtccttgcccttg |
9343707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 407 - 551
Target Start/End: Original strand, 13180550 - 13180694
Alignment:
| Q |
407 |
ataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactcca |
506 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| |
|
|
| T |
13180550 |
ataaaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccattttatcctccatgctttctagtgtaggtttggactcca |
13180649 |
T |
|
| Q |
507 |
agacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13180650 |
agacttttgccaccaattgagttagggcctccttagctttcttgg |
13180694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 407 - 551
Target Start/End: Original strand, 13185084 - 13185228
Alignment:
| Q |
407 |
ataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactcca |
506 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| |
|
|
| T |
13185084 |
ataaaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccattttatcctccatgctttctagtgtaggtttggactcca |
13185183 |
T |
|
| Q |
507 |
agacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13185184 |
agacttttgccaccaattgagttagggcctccttagctttcttgg |
13185228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 407 - 551
Target Start/End: Original strand, 33758628 - 33758772
Alignment:
| Q |
407 |
ataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactcca |
506 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||| |
|
|
| T |
33758628 |
ataaaatggacagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccattttatcctccatgctttatagtgtaggtttggactcca |
33758727 |
T |
|
| Q |
507 |
agacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
33758728 |
aaacttttgccaccaattgagttaaggcctccttaactttcttgg |
33758772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 34384 - 34561
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34384 |
cactttttattacaacataacaagaacaactaaata----aaacgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccatt |
34479 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
34480 |
ttatcctccatgctttctagtgtaggtttgaactctaagacttttgccaccaattgagttagggcctccttaactttcttgg |
34561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 18774931 - 18775108
Alignment:
| Q |
371 |
cactttttattacaacataacaaaataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattc |
470 |
Q |
| |
|
||||||||||||||||||||||| | || | || ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
18774931 |
cactttttattacaacataacaaga--ac-atctaaataaaatgggcagcaagagatgcgccccacccctcctccattggtttgatgcacatgaccattt |
18775027 |
T |
|
| Q |
471 |
taccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
18775028 |
tatcctccatgctttctagtgtaggtttggactccaagactttttccaccaattgagttaggtcctccttagctttcttgg |
18775108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 440 - 551
Target Start/End: Original strand, 18783947 - 18784058
Alignment:
| Q |
440 |
tcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctcct |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
18783947 |
tcctccaatggtttgatgcacatgaccattttatcctccatgctttctagtgtaggtttggactccaagactttttccaccaattgagttagggcctcct |
18784046 |
T |
|
| Q |
540 |
tagctttcttgg |
551 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18784047 |
tagctttcttgg |
18784058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 17465393 - 17465582
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| | | |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17465393 |
cactttttattacaacataacaagaacaactaaaca----aaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccatt |
17465488 |
T |
|
| Q |
470 |
ctaccctc------------catgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17465489 |
ttatcctccattttatcctccatgctttctagtgtaggtttggactccaagacttttgccaccaattgtgttagggcctccttagctttcttgg |
17465582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 407 - 551
Target Start/End: Original strand, 22825691 - 22825835
Alignment:
| Q |
407 |
ataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactcca |
506 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| || |||| |||||| |||||||||||||| |||||| |
|
|
| T |
22825691 |
ataaaatgggcagcaagagatgcaccccacccctccttcaatggtttgatgcacatgaccattttatcctcaatgctttctagtgtaggtttggactcca |
22825790 |
T |
|
| Q |
507 |
agacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
22825791 |
agacttttgccacccattgagttagggcctccttagctttcttgg |
22825835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 371 - 526
Target Start/End: Original strand, 22821924 - 22822076
Alignment:
| Q |
371 |
cactttttattacaacataacaa-aataactagatatataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccatt |
469 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| ||||||| |||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
22821924 |
cactttttattacaacataacaagaacaactaaata----aaatgggcagcaagagatgcgccctacacctcctccaatggtttgatgcacatgaccatt |
22822019 |
T |
|
| Q |
470 |
ctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattga |
526 |
Q |
| |
|
|| |||| |||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22822020 |
ttatcctcaatgctttctagtgtaggtttggactccaagacttttgccaccaattga |
22822076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 407 - 551
Target Start/End: Complemental strand, 37259823 - 37259681
Alignment:
| Q |
407 |
ataaaatgggcagtaagagatctgccccacccatcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactcca |
506 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||| | |
|
|
| T |
37259823 |
ataaaatgggcagcaagagatgcgccccacccctcctccaatggtttgatgcacatgaccattttatcctccatgctttctagtgtatgtttggact--a |
37259726 |
T |
|
| Q |
507 |
agacttttgccaccaattgagttagcgcctccttagctttcttgg |
551 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37259725 |
agacttttgccaccaattgagttagggcctccttaactttcttgg |
37259681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 440 - 551
Target Start/End: Complemental strand, 1398 - 1287
Alignment:
| Q |
440 |
tcctccaatggtttgatgcacatgaccattctaccctccatgcttcctagtgtaggtttgaactccaagacttttgccaccaattgagttagcgcctcct |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
1398 |
tcctccaatggtttgatgcacatgaccattttatcctccatgctttctagtgtaggtttggactccaagacttttaccaccaattgagttaggacctcct |
1299 |
T |
|
| Q |
540 |
tagctttcttgg |
551 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1298 |
tagctttcttgg |
1287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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