View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411R-Insertion-6 (Length: 547)

Name: NF1411R-Insertion-6
Description: NF1411R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411R-Insertion-6
NF1411R-Insertion-6
[»] chr5 (29 HSPs)
chr5 (9-547)||(29224748-29225290)
chr5 (393-444)||(24498579-24498630)
chr5 (379-437)||(18981190-18981248)
chr5 (392-442)||(26675960-26676010)
chr5 (392-442)||(26947568-26947618)
chr5 (362-443)||(5107229-5107310)
chr5 (384-433)||(7713538-7713587)
chr5 (379-444)||(18872662-18872727)
chr5 (381-445)||(35131109-35131173)
chr5 (389-429)||(42659587-42659627)
chr5 (370-413)||(18697776-18697818)
chr5 (370-437)||(25603992-25604059)
chr5 (362-444)||(11637556-11637638)
chr5 (384-442)||(13864341-13864399)
chr5 (390-444)||(29695010-29695064)
chr5 (395-437)||(36170057-36170099)
chr5 (370-444)||(40715941-40716015)
chr5 (400-434)||(42178827-42178861)
chr5 (393-434)||(5614770-5614811)
chr5 (381-442)||(8544992-8545053)
chr5 (381-442)||(23118054-23118115)
chr5 (370-437)||(25861939-25862003)
chr5 (403-444)||(25928909-25928950)
chr5 (201-238)||(29146715-29146752)
chr5 (393-442)||(36623189-36623238)
chr5 (390-442)||(26034620-26034672)
chr5 (384-444)||(33369419-33369479)
chr5 (381-433)||(37073771-37073823)
chr5 (382-434)||(38370755-38370807)
[»] chr1 (25 HSPs)
chr1 (381-444)||(42146310-42146373)
chr1 (381-445)||(51046136-51046200)
chr1 (370-437)||(47719099-47719166)
chr1 (393-438)||(4859084-4859129)
chr1 (385-437)||(31759900-31759952)
chr1 (385-434)||(44287148-44287197)
chr1 (381-437)||(37050931-37050987)
chr1 (362-410)||(38000073-38000121)
chr1 (370-437)||(11410629-11410696)
chr1 (370-437)||(51067886-51067953)
chr1 (395-445)||(41182623-41182673)
chr1 (370-444)||(41973250-41973324)
chr1 (381-415)||(46012399-46012433)
chr1 (375-436)||(5468851-5468912)
chr1 (392-433)||(13953888-13953929)
chr1 (389-442)||(14556569-14556622)
chr1 (384-437)||(23045193-23045246)
chr1 (379-444)||(28213908-28213973)
chr1 (387-444)||(48681942-48681999)
chr1 (395-444)||(49843429-49843478)
chr1 (385-417)||(422569-422601)
chr1 (381-445)||(2613716-2613780)
chr1 (381-437)||(32433098-32433154)
chr1 (393-437)||(47071973-47072017)
chr1 (384-444)||(49222811-49222871)
[»] chr4 (29 HSPs)
chr4 (362-442)||(50380820-50380900)
chr4 (381-442)||(6459927-6459988)
chr4 (381-444)||(51436609-51436672)
chr4 (384-442)||(36569170-36569228)
chr4 (384-438)||(39146643-39146697)
chr4 (384-444)||(14202485-14202545)
chr4 (393-437)||(39595952-39595996)
chr4 (381-433)||(41536928-41536980)
chr4 (390-437)||(47704584-47704631)
chr4 (399-437)||(20515727-20515765)
chr4 (398-444)||(24837493-24837539)
chr4 (382-436)||(37422194-37422248)
chr4 (395-437)||(46779139-46779181)
chr4 (384-434)||(50668345-50668395)
chr4 (393-450)||(2587715-2587772)
chr4 (393-442)||(32923245-32923294)
chr4 (391-444)||(38340333-38340386)
chr4 (384-437)||(42773054-42773107)
chr4 (392-437)||(44857200-44857245)
chr4 (384-437)||(49952575-49952628)
chr4 (392-437)||(54587902-54587947)
chr4 (381-437)||(7371551-7371607)
chr4 (395-443)||(8737725-8737773)
chr4 (356-444)||(25593541-25593628)
chr4 (393-433)||(37381246-37381286)
chr4 (384-444)||(43374278-43374338)
chr4 (389-433)||(52693807-52693851)
chr4 (377-437)||(52699375-52699435)
chr4 (401-445)||(56309323-56309367)
[»] chr2 (27 HSPs)
chr2 (370-444)||(44026603-44026677)
chr2 (384-436)||(19159944-19159996)
chr2 (370-446)||(19967411-19967487)
chr2 (384-444)||(38334639-38334699)
chr2 (381-444)||(8761567-8761630)
chr2 (370-444)||(20455886-20455960)
chr2 (396-445)||(10977077-10977126)
chr2 (379-424)||(17394689-17394734)
chr2 (400-444)||(11846392-11846436)
chr2 (390-445)||(3196554-3196609)
chr2 (393-444)||(18678132-18678183)
chr2 (389-444)||(31837947-31838002)
chr2 (381-444)||(33063981-33064044)
chr2 (370-437)||(41682380-41682446)
chr2 (384-442)||(9519720-9519778)
chr2 (382-444)||(13196695-13196757)
chr2 (370-444)||(22523004-22523078)
chr2 (362-444)||(34977199-34977281)
chr2 (362-428)||(41542967-41543033)
chr2 (384-437)||(5168585-5168638)
chr2 (384-445)||(7537104-7537165)
chr2 (383-432)||(7539037-7539086)
chr2 (384-437)||(7772466-7772519)
chr2 (395-444)||(8775265-8775314)
chr2 (393-437)||(20239345-20239389)
chr2 (401-437)||(38622941-38622977)
chr2 (370-434)||(41853370-41853434)
[»] chr8 (25 HSPs)
chr8 (389-434)||(3456832-3456877)
chr8 (388-444)||(40316851-40316907)
chr8 (370-444)||(7380039-7380113)
chr8 (355-445)||(8717452-8717542)
chr8 (370-444)||(35682684-35682758)
chr8 (362-437)||(574386-574461)
chr8 (390-445)||(18959143-18959198)
chr8 (375-434)||(26695302-26695361)
chr8 (370-437)||(40795379-40795446)
chr8 (370-444)||(6447184-6447258)
chr8 (393-447)||(39975482-39975536)
chr8 (393-435)||(41603065-41603107)
chr8 (391-444)||(10732788-10732841)
chr8 (389-434)||(12133548-12133593)
chr8 (376-433)||(38489200-38489257)
chr8 (384-437)||(45049577-45049630)
chr8 (392-444)||(1230675-1230727)
chr8 (381-413)||(11670777-11670809)
chr8 (393-449)||(17062354-17062410)
chr8 (393-449)||(17585948-17586004)
chr8 (372-436)||(24687782-24687844)
chr8 (384-444)||(27718900-27718960)
chr8 (370-442)||(28580941-28581013)
chr8 (384-444)||(29293172-29293232)
chr8 (393-437)||(41625196-41625240)
[»] chr7 (24 HSPs)
chr7 (381-442)||(429181-429242)
chr7 (362-434)||(27270240-27270312)
chr7 (370-437)||(9893072-9893139)
chr7 (393-444)||(32496881-32496932)
chr7 (370-437)||(34000264-34000331)
chr7 (382-437)||(47960898-47960953)
chr7 (384-434)||(32855525-32855575)
chr7 (370-444)||(39706615-39706689)
chr7 (391-433)||(44639647-44639689)
chr7 (384-437)||(41132446-41132499)
chr7 (370-414)||(16198408-16198452)
chr7 (362-434)||(27263346-27263418)
chr7 (396-436)||(35751389-35751429)
chr7 (393-436)||(21580819-21580862)
chr7 (370-437)||(48527192-48527259)
chr7 (362-444)||(4905271-4905353)
chr7 (364-445)||(2622319-2622400)
chr7 (362-415)||(2962710-2962763)
chr7 (383-424)||(23205367-23205408)
chr7 (400-444)||(12167402-12167446)
chr7 (393-437)||(15015243-15015287)
chr7 (389-429)||(24099246-24099286)
chr7 (384-444)||(29726795-29726855)
chr7 (370-434)||(48837872-48837936)
[»] chr6 (16 HSPs)
chr6 (395-444)||(9311947-9311996)
chr6 (384-444)||(13496111-13496171)
chr6 (381-444)||(9665305-9665368)
chr6 (370-445)||(28951393-28951468)
chr6 (370-444)||(8916466-8916540)
chr6 (384-437)||(12904323-12904376)
chr6 (371-447)||(2213289-2213365)
chr6 (370-437)||(8629688-8629755)
chr6 (381-444)||(10902335-10902398)
chr6 (381-444)||(11148207-11148270)
chr6 (371-444)||(12336319-12336392)
chr6 (384-437)||(23635720-23635773)
chr6 (384-445)||(24438288-24438349)
chr6 (381-429)||(6283946-6283994)
chr6 (393-437)||(9977059-9977103)
chr6 (384-420)||(12459747-12459783)
[»] chr3 (15 HSPs)
chr3 (373-444)||(21331412-21331483)
chr3 (384-438)||(17755122-17755176)
chr3 (384-438)||(19056442-19056496)
chr3 (393-442)||(10843796-10843845)
chr3 (380-444)||(53633619-53633683)
chr3 (381-444)||(7827503-7827566)
chr3 (379-442)||(46337231-46337294)
chr3 (379-437)||(47099036-47099094)
chr3 (362-444)||(48376830-48376912)
chr3 (393-434)||(21160057-21160098)
chr3 (392-433)||(43630432-43630473)
chr3 (376-409)||(45254261-45254294)
chr3 (370-434)||(1743982-1744046)
chr3 (381-437)||(5941297-5941353)
chr3 (393-437)||(42784959-42785003)
[»] scaffold0070 (1 HSPs)
scaffold0070 (379-436)||(42933-42990)
[»] scaffold0445 (1 HSPs)
scaffold0445 (370-437)||(4472-4539)
[»] scaffold0312 (1 HSPs)
scaffold0312 (385-417)||(7971-8003)
[»] scaffold0062 (1 HSPs)
scaffold0062 (370-442)||(7471-7542)
[»] scaffold0008 (1 HSPs)
scaffold0008 (393-437)||(122893-122937)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 547
Target Start/End: Original strand, 29224748 - 29225290
Alignment:
Q  9 aaatgtttgtggtaaaacaaagtacccgcatgcacaattataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacacta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224748 aaatgtttgtggtaaaacaaagtacccgcatgcacaattataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacacta 29224847  T
Q  109 ttttgatatacatttccaattttatttagtactacatttgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttgtaaacatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29224848 ttttgatatacatttccaattttatttagtactacatttgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttg-aaacatt 29224946  T
Q  209 tattgttctacttttgtttccttaattgatcttatatgagaaacatgttggctgtaagaaacatagcatagcaaatcaggatgttgacatggattagcat 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224947 tattgttctacttttgtttccttaattgatgttatatgagaaacatgttggctgtaagaaacatagcatagcaaatcaggatgttgacatggattagcat 29225046  T
Q  309 ttcaagataaaataatgctgaaaatactaattattttttacatggaatatttattttttacggtggccgagattcgaactccgaaccttacatatattat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |  |||||||||  | |||||||||||||||||    
T  29225047 ttcaagataaaataatgctgaaaatactaattattttttacatggaatatttttcttttatggtggtcaggattcgaacctcaaaccttacatatattat 29225146  T
Q  409 gtattattcatatcaattgagttaagctcgcgaggatttttac---------ttgcatgagaagtcaacatagcaacacggaaaataaatgagagtggat 499  Q
      ||| | |||    |||||||||| ||| |||||| ||||||         || |||||||||||||||||||||||| ||||||||||||| ||||||    
T  29225147 acattgtccat----attgagttaaactcacgaggacttttacattgaatatttacatgagaagtcaacatagcaacactgaaaataaatgagtgtggat 29225242  T
Q  500 tcattgattactaggattcattgattacttttctaccttatgtaccac 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29225243 tcattgattactaggattcattgattacttttctaccttatgtaccac 29225290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 24498630 - 24498579
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||| ||||||    
T  24498630 accttacatattttatgcattattcatatcaactgagttaagctcacgagga 24498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 18981190 - 18981248
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||| ||||||||||||||||||||| ||| ||| || || |||||||||||||    
T  18981190 gattcgaaccccgaaccttacatatattatgcattgttcttaccatttgagttaagctc 18981248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 26675960 - 26676010
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||||||||||||||||||||||| || ||||||| |||||||| ||||    
T  26675960 aaccttacatatattatgtattattcctaacaattgaattaagctcacgag 26676010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 26947568 - 26947618
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||||||||||||||||||||||| || ||||||| |||||||| ||||    
T  26947568 aaccttacatatattatgtattattcctaacaattgaattaagctcacgag 26947618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 443
Target Start/End: Original strand, 5107229 - 5107310
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagg 443  Q
    ||||||| ||||| || | |||||||  || ||||| ||||||||||| |||||||||| ||| |||||||||||| |||||    
T  5107229 ttttttatggtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagctcacgagg 5107310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 7713587 - 7713538
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    ||||||| |||||| ||||||||||| |||||||||||||| ||||||||    
T  7713587 gaactccaaaccttgcatatattatgcattattcatatcaactgagttaa 7713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 18872727 - 18872662
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||| ||||||||| ||||||||||| ||| | |||| ||| |||||||||||| ||||||    
T  18872727 gattcgaaccccgaaccttgcatatattatgcattttccataacaagtgagttaagctcacgagga 18872662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 35131173 - 35131109
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    ||||||||||||||||| ||||| |||||||||||  ||| ||| |||||||||||  |||||||    
T  35131173 ttcgaactccgaaccttgcatattttatgtattatcgataacaactgagttaagcttacgaggat 35131109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 42659627 - 42659587
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgag 429  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  42659627 ccgaaccttacatatattatgcattatttatatcaattgag 42659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 18697818 - 18697776
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtatt 413  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  18697818 ggtggccga-attcgaactccgaacgttacatatattatgtatt 18697776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 25603992 - 25604059
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| ||||||||| ||||||||| ||||||||||| | | | |||||||| |||| |||||||    
T  25603992 ggtggccgggattcgaaccccgaaccttgcatatattatgcactgtccatatcaactgagctaagctc 25604059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 11637556 - 11637638
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| ||||| || | ||||||| ||||||||| ||||| ||||| ||| | |||| ||| |||||||||||| ||||||    
T  11637556 ttttttatggtggtcggggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgagga 11637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 13864399 - 13864341
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||| ||| ||||| ||||||||||||||| |||||| ||| |||||||||||| ||||    
T  13864399 gaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacgag 13864341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 29695064 - 29695010
Alignment:
Q  390 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||| || ||||||    
T  29695064 cgaaccttacatatattatgcattgtccatatcaactgagttaaggtcacgagga 29695010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 36170099 - 36170057
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||||||||| ||||||| || ||||||||||||||||    
T  36170099 cttacatatattatgcattattcctagcaattgagttaagctc 36170057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 40715941 - 40716015
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| | || |||| ||| ||||| ||||||||||| ||| | ||||||||||||| ||||||| ||||||    
T  40715941 ggtggccggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacgagga 40716015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 434
Target Start/End: Original strand, 42178827 - 42178861
Alignment:
Q  400 atatattatgtattattcatatcaattgagttaag 434  Q
    |||||||||||||||||| ||||||||||||||||    
T  42178827 atatattatgtattattcttatcaattgagttaag 42178861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Complemental strand, 5614811 - 5614770
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  5614811 accttacatatattatgcattatccatatcaactgagttaag 5614770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 8544992 - 8545053
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||||||||| ||||| ||||||||||| ||| | | |||||| |||||||||||| ||||    
T  8544992 ttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgag 8545053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 23118054 - 23118115
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||||| || |||||||||||||||||| ||| | | |||||| |||||||||||| ||||    
T  23118054 ttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgag 23118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 25861939 - 25862003
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| | || |||||||| ||||||||||||||||   ||||||||| |||||||| |||||||    
T  25861939 ggtggccggggtttgaactccggaccttacatatattat---ttattcataccaattgagctaagctc 25862003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 25928950 - 25928909
Alignment:
Q  403 tattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||| | ||||||||||||||||||||| ||||||    
T  25928950 tattatgtattgtccatatcaattgagttaagctcacgagga 25928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 29146752 - 29146715
Alignment:
Q  201 taaacatttattgttctacttttgtttccttaattgat 238  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  29146752 taaacatttatttttctacttttgtttccttaaatgat 29146715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 36623189 - 36623238
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||| ||||||||||| ||||||| |||||| |||||||||||| ||||    
T  36623189 accttgcatatattatgcattattcttatcaactgagttaagctcacgag 36623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 26034620 - 26034672
Alignment:
Q  390 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||||| ||||||||||| ||| |||||| ||| |||||||||||| ||||    
T  26034620 cgaacctttcatatattatgcattgttcataccaactgagttaagctcacgag 26034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 33369419 - 33369479
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| |||||| || |||| |||||||||| |||||| ||| |||||||||||| ||||||    
T  33369419 gaaccccgaacgttgcatacattatgtattgttcataccaactgagttaagctcacgagga 33369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 37073771 - 37073823
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    ||||||| ||||||||||||||||||||| ||  | |||| ||||||||||||    
T  37073771 ttcgaaccccgaaccttacatatattatgcatagtccataccaattgagttaa 37073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 38370807 - 38370755
Alignment:
Q  382 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||||| ||||||||||| ||||| ||| || |||| ||||||||||||    
T  38370807 tcgaactccggaccttacatattttatgcattgtttatattaattgagttaag 38370755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 42146373 - 42146310
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  42146373 ttcgaactccgaaccttgcatatattatatattattcgtatcaattgagttaagctcacgagga 42146310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 51046200 - 51046136
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| ||| |||||||    
T  51046200 ttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacgaggat 51046136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 47719099 - 47719166
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||| | || ||| ||||||||||||    
T  47719099 ggtggccgggattcgaactccgaaccttgcatatattatgcattatccttaccaactgagttaagctc 47719166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 4859129 - 4859084
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcg 438  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  4859129 accttacatatattatgtattattcttatcaactgagttaagctcg 4859084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 31759900 - 31759952
Alignment:
Q  385 aactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  31759900 aactccggaccttgcatatattatgcattatccatatcaattgagttaagctc 31759952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 44287148 - 44287197
Alignment:
Q  385 aactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||||||||| |||||||| |||||||||||| |||||||| ||||    
T  44287148 aactccgaaccttatatatattacgtattattcataccaattgagctaag 44287197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 37050987 - 37050931
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  37050987 ttcgaaccccggaccttgcatattttatgcattattcataccaattgagttaagctc 37050931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 38000121 - 38000073
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgt 410  Q
    ||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  38000121 ttttttatggtggccggaattcgaaccccgaaccttacatatattatgt 38000073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 11410696 - 11410629
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| || ||||||||| ||  ||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  11410696 ggtggtcgggattcgaaccccagaccttacatattttatgtattgttcataccaactgagttaagctc 11410629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 51067886 - 51067953
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| || |||| |||| |||| |||| ||||||||||||||||||| || ||| ||||||||||||    
T  51067886 ggtggtcgggatttgaaccccgagccttgcatatattatgtattattcttaccaactgagttaagctc 51067953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 41182623 - 41182673
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||| |||||||| |||||||||| ||| |||||||||||| |||||||    
T  41182623 cttacacatattatgcattattcataccaactgagttaagctcacgaggat 41182673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 41973324 - 41973250
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| | ||||||| ||| ||||| ||||||||||| ||| | | || ||||| |||||||||||||||||    
T  41973324 ggtggccggggttcgaaccccggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgagga 41973250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 46012399 - 46012433
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattat 415  Q
    ||||||||||||||||| |||||||||||||||||    
T  46012399 ttcgaactccgaaccttgcatatattatgtattat 46012433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 5468912 - 5468851
Alignment:
Q  375 ccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 436  Q
    |||| |||| |||||| ||| |||||||||||||  ||||||| |||||| |||||||||||    
T  5468912 ccgaaattcaaactccaaactttacatatattatacattattcctatcaactgagttaagct 5468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 13953888 - 13953929
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    |||||| ||||||||||| ||| |||||||||||||||||||    
T  13953888 aaccttgcatatattatgcattgttcatatcaattgagttaa 13953929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 14556569 - 14556622
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||| ||| |||||||||  ||| |||||||| |||||||||||||||||||    
T  14556569 ccgaactttatatatattatacattgttcatatcgattgagttaagctcgcgag 14556622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 23045246 - 23045193
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| ||||||||||||||||| ||| ||||||| ||  |||||||||||    
T  23045246 gaactccggaccttacatatattatgcattgttcatattaacggagttaagctc 23045193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 28213973 - 28213908
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||| || || ||||||||||| ||||||  ||||||| ||| |||||||| ||||||    
T  28213973 gattcgaactccaaatctcacatatattatatattatgtatatcaactgaattaagctcacgagga 28213908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 48681942 - 48681999
Alignment:
Q  387 ctccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||| ||||||||||| ||| |||||| ||| |||| ||||||| ||||||    
T  48681942 ctccgaaccttgcatatattatgcattgttcataccaactgagctaagctcacgagga 48681999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 49843478 - 49843429
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||| ||| |||| | |||||||||||||||| ||||||    
T  49843478 cttacatatattatgcattgttcaaaccaattgagttaagctcacgagga 49843429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 422601 - 422569
Alignment:
Q  385 aactccgaaccttacatatattatgtattattc 417  Q
    ||||||||||||||||||||||||| |||||||    
T  422601 aactccgaaccttacatatattatgcattattc 422569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 2613780 - 2613716
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    ||||||| ||||||||||||||| ||||| ||| | |||| ||| |||| ||||||| |||||||    
T  2613780 ttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgaggat 2613716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 32433098 - 32433154
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| |||||||||| |||| ||||| ||| |||||||| | ||||||||||||    
T  32433098 ttcgaaccccgaaccttatatattttatgcatttttcatatcgactgagttaagctc 32433154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 47071973 - 47072017
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| ||||||||||||||| ||| || ||||||||||||||||    
T  47071973 accttgcatatattatgtattgttcttaccaattgagttaagctc 47072017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 49222871 - 49222811
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| ||| ||||| |||||||| || ||| ||| ||||||||||||||||||| ||||||    
T  49222871 gaaccccggaccttgcatatattgtgcattgttcctatcaattgagttaagctcacgagga 49222811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 442
Target Start/End: Original strand, 50380820 - 50380900
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||||| ||||| ||||||| |||||||| ||||||||||||||||| ||| |||||| ||| ||| |||||||| ||||    
T  50380820 ttttttatggtggtcgagatttgaactccggaccttacatatattatgcattgttcataccaactgaattaagctcacgag 50380900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 6459927 - 6459988
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| ||||    
T  6459927 ttcgaactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacgag 6459988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 51436609 - 51436672
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||||| ||||||||||| ||| ||| |||||| ||||||||| || ||||||    
T  51436609 ttcgaactccgaaccttgcatatattatgcattgttcgtatcaactgagttaagttcacgagga 51436672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 36569228 - 36569170
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||||||||||||||||||||||| ||| ||||||  ||||||| ||||||| ||||    
T  36569228 gaactccgaaccttacatatattatgcatttttcatactaattgagctaagctcacgag 36569170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 39146697 - 39146643
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 438  Q
    |||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||    
T  39146697 gaactccgaaccttacttatattatgcattgtccatatcaactgagttaagctcg 39146643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 14202485 - 14202545
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| ||| ||||||||||||||||| ||||| || ||||| |||||||||||| ||||||    
T  14202485 gaaccccggaccttacatatattatgcattatccaaatcaactgagttaagctcacgagga 14202545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 39595952 - 39595996
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||    
T  39595952 accttgcatatattatgtattatttatatcaattgagctaagctc 39595996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 41536980 - 41536928
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    |||||||| |||||||| ||||||||||||||| | | |||||||||||||||    
T  41536980 ttcgaacttcgaaccttgcatatattatgtattgtccttatcaattgagttaa 41536928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 47704631 - 47704584
Alignment:
Q  390 cgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||||||||  |||||||||| ||| ||||||||||||    
T  47704631 cgaaccttacatatattatacattattcataccaactgagttaagctc 47704584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 20515727 - 20515765
Alignment:
Q  399 catatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  20515727 catatattatgtaatattcctatcaattgagttaagctc 20515765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 24837493 - 24837539
Alignment:
Q  398 acatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  24837493 acatatattatgtattgttcatatcaactaagttaagctcacgagga 24837539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 37422248 - 37422194
Alignment:
Q  382 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 436  Q
    ||||||||||||||||||| |||||||| ||| || ||| ||| |||||||||||    
T  37422248 tcgaactccgaaccttacacatattatgcattgttaataccaactgagttaagct 37422194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 46779181 - 46779139
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  46779181 cttacatatattacgcattattcctatcaattgagttaagctc 46779139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 50668395 - 50668345
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||| ||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  50668395 gaaccccgaaccttacatatattatgtattgttcataccaactgaattaag 50668345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 2587715 - 2587772
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttta 450  Q
    ||||||||||||||||| ||||| |||| |||||||| ||||||| ||| ||| ||||    
T  2587715 accttacatatattatgcattatccataccaattgagctaagctcacgatgatattta 2587772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 32923245 - 32923294
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||||||||||||||| ||| |||||| ||| |||||||||||| ||||    
T  32923245 accttacatatattatgcattgttcataccaactgagttaagctcacgag 32923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 38340333 - 38340386
Alignment:
Q  391 gaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||| ||||||||| | |||| ||| |||||||||||| ||||||    
T  38340333 gaaccttacatattttatgtattgtccataccaactgagttaagctcacgagga 38340386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 42773107 - 42773054
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| ||||||||||||||| ||||||||| | |||||||| ||||||| ||||    
T  42773107 gaacaccgaaccttacatattttatgtattgtccatatcaactgagttatgctc 42773054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 44857200 - 44857245
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||| |||||||||||||||||  ||| ||||||||||||||||    
T  44857200 aaccttgcatatattatgtattatctataccaattgagttaagctc 44857245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 49952575 - 49952628
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| ||| ||||||||||||||||| ||| | || ||||||||||||||||||    
T  49952575 gaaccccggaccttacatatattatgcattgtccaaatcaattgagttaagctc 49952628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 54587947 - 54587902
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  54587947 aaccttacatatattatgcattatccatatcaactgagttatgctc 54587902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 7371551 - 7371607
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| ||| ||||| ||||||||||||||| | | |||||| ||||||||||||    
T  7371551 ttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctc 7371607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 8737773 - 8737725
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctcgcgagg 443  Q
    ||||||||||||||||||| || ||||||||||||  |||||| |||||    
T  8737773 cttacatatattatgtattgtttatatcaattgagcgaagctcacgagg 8737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 25593541 - 25593628
Alignment:
Q  356 tatttattttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||| ||||||| |||| ||| |||| |||||||||||||| ||||| ||||| ||  | ||||||||||| | ||||||| ||||||    
T  25593541 tattttttttttatggtgaccgggatttgaactccgaaccttgcatattttatgcatcgtccatatcaattg-gctaagctcacgagga 25593628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 37381246 - 37381286
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaa 433  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  37381246 accttacatatattatgcattatctatatcaattgagttaa 37381286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 43374278 - 43374338
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||| ||||| ||||| ||| | |||||||| |||| ||||||| ||||||    
T  43374278 gaactccgaaccttgcatattttatgcattgtccatatcaactgagctaagctcacgagga 43374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 52693851 - 52693807
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    ||||||||||||||||||||||||| ||| ||| || ||||||||    
T  52693851 ccgaaccttacatatattatgtattcttcctattaactgagttaa 52693807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 52699435 - 52699375
Alignment:
Q  377 gagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| |||||  |||||||||||||||||| ||||||| ||  ||||||| |||||||    
T  52699435 gagattcaaactcaaaaccttacatatattatgcattattcttactaattgagataagctc 52699375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 56309323 - 56309367
Alignment:
Q  401 tatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    ||||||||| ||| | ||||||||||||||||||||| |||||||    
T  56309323 tatattatgcattgtccatatcaattgagttaagctcacgaggat 56309367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 44026677 - 44026603
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| |||||||| |||| |||||||||||||||||||||  || | |||| |||||||||||||||| ||||||    
T  44026677 ggtgaccgagatttgaaccccgaaccttacatatattatgcgttgtccataccaattgagttaagctcacgagga 44026603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 19159996 - 19159944
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 436  Q
    |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  19159996 gaactccgaaccttgcatatattatgcattgttcatatcaactgagttaagct 19159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 19967487 - 19967411
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggatt 446  Q
    ||||| |||| || |||||||||||||| || |||||||| ||| |||||||||| |||| ||||||| ||||||||    
T  19967487 ggtggtcgaggtttgaactccgaaccttgcacatattatgcattgttcatatcaactgagctaagctcacgaggatt 19967411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 38334699 - 38334639
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||| |||| ||| ||||||    
T  38334699 gaactctgaaccttacatatattatatattattcataccaattgaattaatctcacgagga 38334639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 8761567 - 8761630
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||| | |||||||||||||||||||| | |||| ||| |||||||||||| ||||||    
T  8761567 ttcgaactccaacccttacatatattatgtattgtccataccaactgagttaagctcacgagga 8761630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 20455960 - 20455886
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| ||||||||| ||| ||||| ||||||||||| ||| | |||| |||||||| ||||||| ||||||    
T  20455960 ggtggccgggattcgaaccccggaccttgcatatattatgcattgtccataccaattgagctaagctcacgagga 20455886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 10977077 - 10977126
Alignment:
Q  396 ttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  10977077 ttacatatattatgtatttttcatatcaaccgagttaagctcacgaggat 10977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 17394734 - 17394689
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaa 424  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  17394734 gattcaaaccccgaaccttacatatattatgtattattcctatcaa 17394689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 11846436 - 11846392
Alignment:
Q  400 atatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||| || ||| |||||||||||||||||||    
T  11846436 atatattatgtattattcctaccaactgagttaagctcgcgagga 11846392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 3196609 - 3196554
Alignment:
Q  390 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||||||||||||||||| ||| |||||||||| ||||  |||||| |||||||    
T  3196609 cgaaccttacatatattatgcattgttcatatcaactgagcaaagctcacgaggat 3196554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 18678183 - 18678132
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||||||||  |||  ||||||||||||||| ||||||    
T  18678183 accttacatatattatgtattatcaatactaattgagttaagctcacgagga 18678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 31837947 - 31838002
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||||||||  ||||| |||| ||||||||||||| || ||||||    
T  31837947 ccgaaccttacatatattatacattatccataccaattgagttaagttcacgagga 31838002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 33064044 - 33063981
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||| ||||| ||||||||||| ||| | |||||||| |||| ||||||| ||||||    
T  33064044 ttcgaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgagga 33063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 41682380 - 41682446
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||| |||||| |||| || |||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  41682380 ggtggctgagatttgaac-cctaaccttacatatattatgcattatttataccaactgagttaagctc 41682446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 9519720 - 9519778
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||| |||||||| ||||||||||| ||| | ||||||||||||| ||||||| ||||    
T  9519720 gaacttcgaaccttgcatatattatgcattgtccatatcaattgagctaagctcacgag 9519778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 13196757 - 13196695
Alignment:
Q  382 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||| ||||||||| ||||||||||| ||| |||||| ||| ||||||||| || ||||||    
T  13196757 tcgaaccccgaaccttgcatatattatgcattgttcataccaactgagttaagttcacgagga 13196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 22523004 - 22523078
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| |||| ||||  |||||||| ||||||||||||||| | |||| ||| |||| ||||||| ||||||    
T  22523004 ggtggccgggatttgaacctcgaaccttgcatatattatgtattgtccataccaactgagctaagctcacgagga 22523078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 34977281 - 34977199
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| |||||||| | ||  ||||||| ||||| ||||||||||| ||| | |||| ||| |||||||||||| ||||||    
T  34977281 ttttttatggtggccggggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctcacgagga 34977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 41542967 - 41543033
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattga 428  Q
    ||||||| |||||||||| ||  ||| ||||||||||||||||||||| ||| | |||| |||||||    
T  41542967 ttttttatggtggccgaggtttaaaccccgaaccttacatatattatgcattgtccataccaattga 41543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 5168585 - 5168638
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| ||||||||| ||||||||||| ||||| | |||||| ||||||||||||    
T  5168585 gaaccccgaaccttgcatatattatgcattatccctatcaactgagttaagctc 5168638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 7537165 - 7537104
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||||| ||||| ||||||||||| ||| ||| |||||| |||||||| ||| |||||||    
T  7537165 gaactccggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgaggat 7537104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 7539086 - 7539037
Alignment:
Q  383 cgaactccgaaccttacatatattatgtattattcatatcaattgagtta 432  Q
    |||| |||||||||| ||||||||||  ||||| ||||||||||||||||    
T  7539086 cgaattccgaaccttgcatatattatacattatccatatcaattgagtta 7539037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 7772466 - 7772519
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| ||||| ||||||||||| ||||| | || ||||||||||||||||    
T  7772466 gaactccggaccttgcatatattatgcattatccttaccaattgagttaagctc 7772519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 8775314 - 8775265
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||||||||||| |||||| |||  ||||||| ||||||    
T  8775314 cttacatatattatgtattattcctatcaactgacctaagctcacgagga 8775265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 20239389 - 20239345
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| ||||||||||| ||||| | |||||||||||||||||||    
T  20239389 accttgcatatattatgcattatccctatcaattgagttaagctc 20239345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 437
Target Start/End: Complemental strand, 38622977 - 38622941
Alignment:
Q  401 tatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  38622977 tatattatgcattattcatattaattgagttaagctc 38622941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 41853434 - 41853370
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||| | ||||||| ||| ||||||||||||||||| ||| || ||||||  |||||||||    
T  41853434 ggtggccggggttcgaacgccggaccttacatatattatgcattgtttatatcagctgagttaag 41853370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 3456832 - 3456877
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3456832 ccgaaccttacatatattatgcattgttcatatcaattgagttaag 3456877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 40316907 - 40316851
Alignment:
Q  388 tccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||    
T  40316907 tccgaactttacatatattatgcattattcatatcaactgagataagctcacgagga 40316851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 7380113 - 7380039
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| ||||||||| || ||||||  |||||||||||||| | |||| |||||||| ||||||| ||||||    
T  7380113 ggtggccgggattcgaacccccaaccttgtatatattatgtattgtccataacaattgagctaagctcacgagga 7380039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 8717452 - 8717542
Alignment:
Q  355 atatttattttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||| ||||||| |||||||||| || |||| ||||||||| ||||||||||| ||| | |||| ||| |||| ||| ||| |||||||    
T  8717452 atatttcttttttatggtggccgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaactgagctaaactcacgaggat 8717542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 35682684 - 35682758
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||  ||||||||||||||||||||| ||| | | || ||| |||| ||||||| ||||||    
T  35682684 ggtggccgagattcgaaacccgaaccttacatatattatggattgtccgtaccaactgagctaagctcacgagga 35682758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 574461 - 574386
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||| ||||| |||  ||||||||||| ||||||||||||||||| ||| |  ||||||| |||| |||||||    
T  574461 ttttttatggtggtcgaagttcgaactccggaccttacatatattatgcattgtctatatcaactgagctaagctc 574386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 18959198 - 18959143
Alignment:
Q  390 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||||| ||||||||||| ||||| | || ||||||||||||||||| ||||||    
T  18959198 cgaaccttgcatatattatgcattatccctaacaattgagttaagctcgagaggat 18959143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 26695302 - 26695361
Alignment:
Q  375 ccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||| ||||| |||||||| ||||||||||||||||| | || |||||||| ||||    
T  26695302 ccgagattagaacttcgaaccttgcatatattatgtattatccttaacaattgagctaag 26695361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 40795446 - 40795379
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||  ||| |||| ||| ||||| ||||||||||||||| |||||| ||| ||||||||||||    
T  40795446 ggtggccggaattagaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctc 40795379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 6447258 - 6447184
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||| |||||| |||||||| ||||| ||||||||||| ||| | |||| ||| |||||||| ||| ||||||    
T  6447258 ggtggctgagatttgaactccggaccttgcatatattatgcattgtccataccaactgagttaaactcacgagga 6447184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 39975536 - 39975482
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattt 447  Q
    ||||||||||||||||||||| ||| || |||||||| ||||||  |||||||||    
T  39975536 accttacatatattatgtattgttcttaccaattgagctaagcttacgaggattt 39975482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 41603107 - 41603065
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagc 435  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  41603107 accttacatatattatgcattgttcataccaattgagttaagc 41603065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 10732788 - 10732841
Alignment:
Q  391 gaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||  |||||||||| ||| |||||| |||||||||||||||| ||||||    
T  10732788 gaaccttgtatatattatgcattgttcataccaattgagttaagctcacgagga 10732841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 12133548 - 12133593
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||||||    
T  12133548 ccgaaccttacatatataatgcattgttcatatcaattcagttaag 12133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 38489200 - 38489257
Alignment:
Q  376 cgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    |||||||||||| ||||||||| ||||||| ||| ||| ||| |||||| ||||||||    
T  38489200 cgagattcgaaccccgaaccttgcatatatcatgcattgttcttatcaactgagttaa 38489257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 45049630 - 45049577
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||    
T  45049630 gaaccccgaaccttacatattttatgcattatccataccaattgagtcaagctc 45049577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 1230675 - 1230727
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||| ||| ||| || ||| |||||||| ||||||||||    
T  1230675 aaccttacatatattatgcattgttcctaccaactgagttaaactcgcgagga 1230727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 11670809 - 11670777
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtatt 413  Q
    ||||||||||| |||||||||||||||||||||    
T  11670809 ttcgaactccggaccttacatatattatgtatt 11670777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 17062354 - 17062410
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttt 449  Q
    ||||| ||||||||||||||| |  ||||||| |||||||||||| |||||| ||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacgaggactttt 17062410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 17586004 - 17585948
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttt 449  Q
    ||||| ||||||||||||||| |  ||||||| |||||||||||| |||||| ||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacgaggactttt 17585948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 24687844 - 24687782
Alignment:
Q  372 tggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 436  Q
    ||||||| ||||||| ||||| |||||||||||||||| ||| || |||||||||||| ||||||    
T  24687844 tggccgaaattcgaa-tccga-ccttacatatattatgcattgtttatatcaattgagctaagct 24687782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 27718900 - 27718960
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| ||||| ||||||||||| ||| | |||||||| |||| ||||||| ||||||    
T  27718900 gaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgagga 27718960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 28581013 - 28580941
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||| || |||| |||| ||||||||||||||| ||||| |||||||||| ||| ||||  |||||| ||||    
T  28581013 ggtggtcgggatttgaaccccgaaccttacatattttatgcattattcataccaactgagccaagctcacgag 28580941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 29293232 - 29293172
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| |||||||||||||||| |||| |  |||| || |||||||||||| ||||||    
T  29293232 gaactccggaccttacatatattatatattgtctatattaactgagttaagctcacgagga 29293172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 41625240 - 41625196
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||||||||||| |||||||||| ||| |||| |||||||    
T  41625240 accttacatatattatgcattattcataccaactgagctaagctc 41625196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 429181 - 429242
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||| ||||| |||||| ||||||||||||||||| |||||||| |||||||||||| ||||    
T  429181 ttcggactccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacgag 429242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 27270312 - 27270240
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||| |||||| ||| ||||||||||||||||| ||||||||||| ||| | |||| ||| |||||||||    
T  27270312 ttttttatggtggctgaggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaag 27270240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 9893072 - 9893139
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| |||| ||||| |||||||| ||||| ||||||||| | ||||||||||||| |||||||    
T  9893072 ggtggccgggatttgaacttcgaaccttgcatattttatgtattgtccatatcaattgagataagctc 9893139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 32496932 - 32496881
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  32496932 accttacatatattatgtattgttcatgctaattgagttaagctcgcgagga 32496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 34000331 - 34000264
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||  ||| |||| ||||||||||||||||||||| ||||| | |||||| ||||||||||||    
T  34000331 ggtggccggtatttgaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctc 34000264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 47960953 - 47960898
Alignment:
Q  382 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||||  ||||||||||||||| | | |||||||||||||||||||    
T  47960953 tcgaactccgaacctcgcatatattatgtattgtccttatcaattgagttaagctc 47960898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 32855575 - 32855525
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  32855575 gaactccgaactttgcatatattatgcattattcatatcaactgagttaag 32855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 39706689 - 39706615
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||| || ||| || |||||| ||||||||||||||| || ||| |||||||||||| ||| ||||||    
T  39706689 ggtggccgagactcaaaccccaaaccttgcatatattatgtattgtttataccaattgagttaatctcacgagga 39706615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 44639689 - 44639647
Alignment:
Q  391 gaaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  44639689 gaaccttacatatattatgtattgttcataccaattgagttaa 44639647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 41132499 - 41132446
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||| |||||||    
T  41132499 gaactccgaaccttgcatattttatgtattgttcaaatcaattgagctaagctc 41132446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 16198452 - 16198408
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtatta 414  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  16198452 ggtggccgagattcgaactccggaccttgcatatattatgcatta 16198408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 27263418 - 27263346
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||| |||||| | | ||||||||||||||||| ||||||||||| ||| | |||| ||| |||||||||    
T  27263418 ttttttatggtggctggggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaag 27263346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 35751389 - 35751429
Alignment:
Q  396 ttacatatattatgtattattcatatcaattgagttaagct 436  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  35751389 ttacatatattatgcattattcatatcaattgagctaagct 35751429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 21580862 - 21580819
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagct 436  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||    
T  21580862 accttacatatattatgcattgtccatatcaattgagttaagct 21580819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 48527259 - 48527192
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| ||||||||||||| ||||| ||||||||||| ||| | | |||||| |||| |||||||    
T  48527259 ggtggccgggattcgaactccggaccttgcatatattatgcattgtccttatcaactgagataagctc 48527192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 4905353 - 4905271
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| |||||||| | || |||||||||||||| ||||| ||||| ||| | || | ||| |||||||||||| ||||||    
T  4905353 ttttttatggtggccggggtttgaactccgaaccttgcatattttatgcattgtccacaacaactgagttaagctcacgagga 4905271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 2622400 - 2622319
Alignment:
Q  364 ttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    ||||| |||||||| | || ||||||  || ||||||||||||||||||| ||| |||||| | || ||||||| |||||||    
T  2622400 ttttatggtggccggggtttgaactctaaatcttacatatattatgtattgttcctatcaactaagctaagctcacgaggat 2622319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 2962710 - 2962763
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattat 415  Q
    ||||||| |||||||| ||||| ||| ||||||||| ||||||||||| |||||    
T  2962710 ttttttatggtggccgggattcaaaccccgaaccttgcatatattatgcattat 2962763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 23205367 - 23205408
Alignment:
Q  383 cgaactccgaaccttacatatattatgtattattcatatcaa 424  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  23205367 cgaaccccgaaccttgcatttattatgtattattcatatcaa 23205408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 12167446 - 12167402
Alignment:
Q  400 atatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||    
T  12167446 atatattatgcattgttcatatcaattgaattaagttcgcgagga 12167402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 15015287 - 15015243
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||||||||||||||| ||| ||| |||||| ||||||||||||    
T  15015287 accttacatatattatgcattgttcttatcaactgagttaagctc 15015243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 24099246 - 24099286
Alignment:
Q  389 ccgaaccttacatatattatgtattattcatatcaattgag 429  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  24099246 ccgaaccttacatatattatgcattgtttatatcaattgag 24099286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 29726855 - 29726795
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| ||||||||| ||||||||||  ||| ||||| |||| |||||||||||| ||||||    
T  29726855 gaaccccgaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgagga 29726795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 48837936 - 48837872
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||| | ||||||| || ||| || ||||||||||| ||||| |||| |||||||||||||    
T  48837936 ggtggccggggttcgaaccccaaactttgcatatattatgcattatccataccaattgagttaag 48837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 9311947 - 9311996
Alignment:
Q  395 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  9311947 cttacatatattatgtattattcataccaactgagttaagctcacgagga 9311996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 13496171 - 13496111
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||| ||||||    
T  13496171 gaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacgagga 13496111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 9665368 - 9665305
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| ||| |||||||||||||||| |||| |||||| |||||||||||| ||| ||||||    
T  9665368 ttcgaaccccggaccttacatatattatatattgttcataccaattgagttaaactcacgagga 9665305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 28951468 - 28951393
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||||||||| ||  ||||| ||||||| ||||||||||| ||| |||||| ||| |||||||||||| |||||||    
T  28951468 ggtggccgaggtttaaactctgaaccttgcatatattatgcattgttcataccaactgagttaagctcacgaggat 28951393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 8916466 - 8916540
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| | | || ||| |||||| ||||| ||||||    
T  8916466 ggtggccgagatttgaactccggaccttgcatatattatgtattgtccctaccaactgagtttagctcacgagga 8916540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 12904323 - 12904376
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||| ||||||||||| ||| |||||||||| |||| |||||||    
T  12904323 gaactccgaaccttgcatatattatgcattgttcatatcaactgaggtaagctc 12904376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 2213365 - 2213289
Alignment:
Q  371 gtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggattt 447  Q
    ||||||| ||||| |||| || ||||| ||||||||||| ||| ||| || ||||||||||||| || |||||||||    
T  2213365 gtggccgggattctaacttcggaccttgcatatattatgcattgttcttaccaattgagttaagttcacgaggattt 2213289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 8629688 - 8629755
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| |||| || |||| ||||||||| ||||||||||| ||| | |||| ||||||||||||||||    
T  8629688 ggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctc 8629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 10902398 - 10902335
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||||| ||| |||||||||||||| ||| | |||||||  |||| ||||||||||||||    
T  10902398 ttcgaactccaaactttacatatattatgcattgtccatatcatctgagctaagctcgcgagga 10902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 11148270 - 11148207
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| |||||||||| |||||||||||||||| ||  | || |||||||||||| ||||||    
T  11148270 ttcgaaccccgaaccttaaatatattatgtattatccaagttaactgagttaagctcacgagga 11148207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 12336319 - 12336392
Alignment:
Q  371 gtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||| |||||||||||| ||| |||||| |||||||||| ||| | ||||| || |||||||| ||| ||||||    
T  12336319 gtggtcgagattcgaaccccgtaccttatatatattatgcattgtccatattaactgagttaaactcacgagga 12336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 23635720 - 23635773
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||||||||||||||||||||| ||| |  ||||||| |||| |||||||    
T  23635720 gaactccgaaccttacatatattatgcattgtatatatcaactgagataagctc 23635773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 24438288 - 24438349
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 445  Q
    |||| |||||| |||||||||||||| ||||||| || ||| ||||||||| || |||||||    
T  24438288 gaaccccgaactttacatatattatgcattattcttaccaactgagttaagttcacgaggat 24438349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 6283994 - 6283946
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgag 429  Q
    |||||||||||| | |||||||||||||| ||| ||| |||||||||||    
T  6283994 ttcgaactccgagctttacatatattatgcattgttcttatcaattgag 6283946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 9977103 - 9977059
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| ||||||||||| ||||| |||| ||||||||||||||||    
T  9977103 accttgcatatattatgcattatccataccaattgagttaagctc 9977059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 12459747 - 12459783
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcata 420  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  12459747 gaaccccgaaccttacatatattatgcattattcata 12459783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 21331412 - 21331483
Alignment:
Q  373 ggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||||||| ||||||||| ||||||||||| ||| | |||| ||| |||| ||||||| ||||||    
T  21331412 ggccgagattcgaaccccgaaccttgcatatattatgcattgtccataacaactgagctaagctcacgagga 21331483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 17755176 - 17755122
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 438  Q
    |||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||    
T  17755176 gaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctcg 17755122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 19056496 - 19056442
Alignment:
Q  384 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 438  Q
    |||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||    
T  19056496 gaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctcg 19056442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 10843796 - 10843845
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||| ||||    
T  10843796 accttgcatatattatgtattattcataccaactgagttaagctcacgag 10843845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 53633619 - 53633683
Alignment:
Q  380 attcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    |||||||| ||| ||||||||||||||||| ||||| | || ||| |||||||||||| ||||||    
T  53633619 attcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgagga 53633683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 7827566 - 7827503
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||||||  ||||||||||||||||| ||| | |||||||| |||||||| ||| ||||||    
T  7827566 ttcgaactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgagga 7827503  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 46337231 - 46337294
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    ||||| |||| || ||||||||||| ||||||||| |||||| | |||||||||||||| ||||    
T  46337231 gattcaaactgcggaccttacatattttatgtattgttcataccgattgagttaagctcacgag 46337294  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 47099036 - 47099094
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| |||| ||||||||| ||||||||||| ||||||| |||||| |||| |||||||    
T  47099036 gatttgaaccccgaaccttgcatatattatgcattattcttatcaactgagctaagctc 47099094  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 48376912 - 48376830
Alignment:
Q  362 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 444  Q
    ||||||| || ||||| ||||||||| || |||||||||||||||||| |||||   || ||| |||| ||||||| ||||||    
T  48376912 ttttttatggcggccgggattcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacgagga 48376830  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Complemental strand, 21160098 - 21160057
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaag 434  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  21160098 accttacatatattatgcattatccatatcaactgagttaag 21160057  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 43630432 - 43630473
Alignment:
Q  392 aaccttacatatattatgtattattcatatcaattgagttaa 433  Q
    |||||||||||||||||| ||| |||||| ||||||||||||    
T  43630432 aaccttacatatattatgcattgttcataccaattgagttaa 43630473  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 409
Target Start/End: Complemental strand, 45254294 - 45254261
Alignment:
Q  376 cgagattcgaactccgaaccttacatatattatg 409  Q
    ||||||||||||||| ||||||||||||||||||    
T  45254294 cgagattcgaactccaaaccttacatatattatg 45254261  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 1743982 - 1744046
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 434  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||| | |||| ||| ||| |||||    
T  1743982 ggtggccgaagttcgaaccccgaaccttgcatatattatgtattgtccataccaactgaattaag 1744046  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 5941297 - 5941353
Alignment:
Q  381 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||| |||||||| | ||||||||||| ||| |||||| ||| ||||||||||||    
T  5941297 ttcgaattccgaaccatgcatatattatgcattgttcataccaactgagttaagctc 5941353  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 42785003 - 42784959
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||||||| |||||||||||| | |||||||| ||||||||||||    
T  42785003 accttacacatattatgtattgtccatatcaactgagttaagctc 42784959  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 42933 - 42990
Alignment:
Q  379 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 436  Q
    ||||||||  ||||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  42933 gattcgaatcccgaaccttgcatatattatgcattattcttatcaactgagttaagct 42990  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 4539 - 4472
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    |||| ||| |||||||||||   ||||||||||||||||| ||||||| |||||| | ||||||||||    
T  4539 ggtgtccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctc 4472  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 7971 - 8003
Alignment:
Q  385 aactccgaaccttacatatattatgtattattc 417  Q
    ||||||||||||||||||||||||| |||||||    
T  7971 aactccgaaccttacatatattatgcattattc 8003  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 7542 - 7471
Alignment:
Q  370 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 442  Q
    |||||||| ||||||||| | || | |||||||| ||||| ||| |||||| |||||||||||||||| ||||    
T  7542 ggtggccgggattcgaacccagatc-ttacatattttatgcattgttcataccaattgagttaagctcacgag 7471  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 122937 - 122893
Alignment:
Q  393 accttacatatattatgtattattcatatcaattgagttaagctc 437  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  122937 accttgcatatattatgcattgttcataccaattgagttaagctc 122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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