View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411R-Insertion-9 (Length: 405)
Name: NF1411R-Insertion-9
Description: NF1411R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411R-Insertion-9 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 38120800 - 38121196
Alignment:
| Q |
9 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120800 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagca |
38120899 |
T |
|
| Q |
109 |
caaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccg |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120900 |
caaccaccacgtccatcaggagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccg |
38120999 |
T |
|
| Q |
209 |
atgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121000 |
atgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcg |
38121099 |
T |
|
| Q |
309 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121100 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38121196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 38609323 - 38608927
Alignment:
| Q |
9 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
38609323 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagca |
38609224 |
T |
|
| Q |
109 |
caaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccg |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| |||||||||| |
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| T |
38609223 |
caaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccg |
38609124 |
T |
|
| Q |
209 |
atgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcg |
308 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38609123 |
acgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcg |
38609024 |
T |
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| Q |
309 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609023 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38608927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 38794106 - 38793710
Alignment:
| Q |
9 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
38794106 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagca |
38794007 |
T |
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| Q |
109 |
caaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccg |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| |||||||||| |
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| T |
38794006 |
caaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccg |
38793907 |
T |
|
| Q |
209 |
atgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcg |
308 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38793906 |
acgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcg |
38793807 |
T |
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| Q |
309 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793806 |
gatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38793710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 34592921 - 34592844
Alignment:
| Q |
9 |
gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgc |
86 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
34592921 |
gaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacgggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 28730378 - 28730770
Alignment:
| Q |
13 |
catcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaac |
112 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| | |
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| T |
28730378 |
catcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagc |
28730477 |
T |
|
| Q |
113 |
caccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgc |
212 |
Q |
| |
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||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28730478 |
caccacgcccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgc |
28730577 |
T |
|
| Q |
213 |
tccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatg |
312 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
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| T |
28730578 |
tccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatg |
28730677 |
T |
|
| Q |
313 |
acgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
405 |
Q |
| |
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|||||||||||||| || || |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28730678 |
acgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgc |
28730770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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