View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_high_13 (Length: 221)

Name: NF1411_high_13
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_high_13
NF1411_high_13
[»] chr1 (3 HSPs)
chr1 (1-203)||(28127758-28127961)
chr1 (1-203)||(28164441-28164643)
chr1 (1-198)||(268436-268633)
[»] chr6 (39 HSPs)
chr6 (1-198)||(26646377-26646574)
chr6 (1-198)||(26752345-26752542)
chr6 (2-203)||(26802335-26802536)
chr6 (1-203)||(27593112-27593314)
chr6 (1-203)||(27677706-27677908)
chr6 (1-203)||(27611094-27611296)
chr6 (1-203)||(27678839-27679041)
chr6 (1-203)||(27718471-27718673)
chr6 (2-203)||(28781032-28781233)
chr6 (1-203)||(27706494-27706696)
chr6 (1-203)||(27724937-27725139)
chr6 (1-203)||(27698586-27698788)
chr6 (11-203)||(28786171-28786363)
chr6 (11-203)||(28792292-28792484)
chr6 (8-203)||(26622869-26623064)
chr6 (8-203)||(26728847-26729042)
chr6 (1-203)||(27604797-27604999)
chr6 (1-202)||(26142759-26142960)
chr6 (2-203)||(31284181-31284382)
chr6 (1-203)||(26884056-26884258)
chr6 (1-203)||(27229125-27229327)
chr6 (1-202)||(25538434-25538635)
chr6 (1-202)||(25579613-25579814)
chr6 (1-202)||(25481636-25481837)
chr6 (1-202)||(26048739-26048940)
chr6 (1-202)||(26055820-26056021)
chr6 (1-202)||(26069908-26070109)
chr6 (1-202)||(26075790-26075991)
chr6 (1-203)||(26655882-26656084)
chr6 (1-203)||(26761853-26762055)
chr6 (1-195)||(28139442-28139636)
chr6 (2-177)||(25507002-25507171)
chr6 (2-198)||(26861514-26861710)
chr6 (29-201)||(27338185-27338357)
chr6 (29-201)||(27398925-27399097)
chr6 (1-129)||(28226917-28227045)
chr6 (1-131)||(28234529-28234659)
chr6 (1-55)||(26823881-26823935)
chr6 (73-203)||(27531361-27531491)
[»] chr8 (1 HSPs)
chr8 (1-198)||(29273862-29274059)
[»] chr4 (5 HSPs)
chr4 (1-203)||(18724164-18724366)
chr4 (1-203)||(18731583-18731785)
chr4 (1-203)||(18679646-18679848)
chr4 (1-203)||(18699479-18699681)
chr4 (1-203)||(18655556-18655758)
[»] scaffold0349 (2 HSPs)
scaffold0349 (6-203)||(14452-14649)
scaffold0349 (1-203)||(3513-3716)
[»] scaffold0277 (2 HSPs)
scaffold0277 (2-203)||(13725-13926)
scaffold0277 (1-203)||(4763-4965)
[»] scaffold1254 (1 HSPs)
scaffold1254 (2-203)||(10-211)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-203)||(7418-7619)
[»] scaffold0038 (2 HSPs)
scaffold0038 (1-129)||(27415-27543)
scaffold0038 (1-131)||(34690-34820)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28127758 - 28127961
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttctt-ctcctctctcaagatc 99  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||| | || ||||| |||||||| || |||||||||||||||     
T  28127758 agaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaagtgacggtgtgatttttttctcctctctcaagatt 28127857  T
Q  100 acaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaac 199  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28127858 acaatcatcaatgaatgtgtggattcccttgtcataaagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaac 28127957  T
Q  200 actt 203  Q
    ||||    
T  28127958 actt 28127961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28164441 - 28164643
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||| ||||||  ||||||| ||||||||||||||||||||||||||||    
T  28164441 agaagaggcatagttgatagataacacaggaataaaaattcaagatttttcaatggccttgatgaatgacggtgtgatttcttctcctctctcaagatca 28164540  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  28164541 caatcatcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaaca 28164640  T
Q  201 ctt 203  Q
    |||    
T  28164641 ctt 28164643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 268436 - 268633
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| | ||| |||    
T  268436 agaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaagttca 268535  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaa 198  Q
    | |||||||||||| ||||||||||||||||||   || |||||||||||||||||| | ||||| ||||||||||||| ||| |||||| |||||||    
T  268536 cgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagttgaggaa 268633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26646574 - 26646377
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||  | ||| | ||||||||| |||||||||| |||||||    
T  26646574 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26646475  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaa 198  Q
    |||||||||||||| ||||| ||||||||||||   || |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  26646474 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaa 26646377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26752542 - 26752345
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||  | ||| | ||||||||| |||||||||| |||||||    
T  26752542 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26752443  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaa 198  Q
    |||||||||||||| ||||| ||||||||||||   || |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  26752442 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaa 26752345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 26802536 - 26802335
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  26802536 gaagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcat 26802437  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
      ||||||||||| || |||||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || |||||||||||    
T  26802436 tgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacac 26802337  T
Q  202 tt 203  Q
    ||    
T  26802336 tt 26802335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27593112 - 27593314
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| | |||||| | |||| ||    
T  27593112 agaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagacca 27593211  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| |||| |||||||||||||   || ||||||||||||| ||| ||||||||||  ||||||||||| || ||||| |||||||| |    
T  27593212 ttgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaata 27593311  T
Q  201 ctt 203  Q
    |||    
T  27593312 ctt 27593314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27677706 - 27677908
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||||||||||| |||||||||  |||| ||||||||| |||||| || ||| | ||||||||| || ||||| | ||| |||    
T  27677706 agaagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaagttca 27677805  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      ||  |||||||| |||||||||||||||||||| || ||||||||||||| ||| ||||||||||  ||||||||||| || |||||  ||||||| |    
T  27677806 tgattgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaata 27677905  T
Q  201 ctt 203  Q
    |||    
T  27677906 ctt 27677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27611094 - 27611296
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| ||||||||   |||||||    
T  27611094 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatca 27611193  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || ||||||||||    
T  27611194 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaaca 27611293  T
Q  201 ctt 203  Q
    |||    
T  27611294 ctt 27611296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27679041 - 27678839
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| |||||||| | |||| ||    
T  27679041 agaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaagacca 27678942  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       | ||||||||| |||| |||||||||||||   || |||||||||||||  || ||||||||||  ||||||||||| || ||||| |||||||| |    
T  27678941 ttcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaata 27678842  T
Q  201 ctt 203  Q
    |||    
T  27678841 ctt 27678839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27718471 - 27718673
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||||    
T  27718471 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatca 27718570  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||| ||  ||||||||| ||||||| || ||||||||||    
T  27718571 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaaca 27718670  T
Q  201 ctt 203  Q
    |||    
T  27718671 ctt 27718673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 28781233 - 28781032
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  28781233 gaagtggcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 28781134  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || |||||||||||    
T  28781133 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28781034  T
Q  202 tt 203  Q
    ||    
T  28781033 tt 28781032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27706494 - 27706696
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||| |||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| || | ||| | ||| |||    
T  27706494 agaagaggcataggtgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaagttca 27706593  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      ||  |||||||| |||||||||||||||||||| |  ||||||||||||| ||| ||||||||||  ||||||||||  || ||||| |||||||| |    
T  27706594 tgattgtcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaata 27706693  T
Q  201 ctt 203  Q
    |||    
T  27706694 ctt 27706696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27724937 - 27725139
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||||    
T  27724937 agaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatca 27725036  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || || |||||||    
T  27725037 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaaca 27725136  T
Q  201 ctt 203  Q
    |||    
T  27725137 ctt 27725139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27698586 - 27698788
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||| |||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||||    
T  27698586 agaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatca 27698685  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || |||| |||||    
T  27698686 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaaca 27698785  T
Q  201 ctt 203  Q
    |||    
T  27698786 ctt 27698788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 28786363 - 28786171
Alignment:
Q  11 tagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaa 110  Q
    |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||   |||||||    
T  28786363 tagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaa 28786264  T
Q  111 tgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 203  Q
    |||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || |||||||||||||    
T  28786263 tgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacactt 28786171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 28792484 - 28792292
Alignment:
Q  11 tagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaa 110  Q
    |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||   |||||||    
T  28792484 tagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaa 28792385  T
Q  111 tgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 203  Q
    |||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || |||||||||||||    
T  28792384 tgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacactt 28792292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 26623064 - 26622869
Alignment:
Q  8 gcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcat 107  Q
    |||||||||  |||||||||||||||||||||  |||| ||||| ||  | ||| ||| ||| | | ||||||| || ||||| | ||| |||| |||||    
T  26623064 gcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcat 26622965  T
Q  108 caatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 203  Q
    ||||||| ||||||||||||||||||   || |||||||||||||  |||||||||||||  |||||||||||||| ||||| || ||||||||||    
T  26622964 caatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacactt 26622869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 26729042 - 26728847
Alignment:
Q  8 gcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcat 107  Q
    |||||||||  |||||||||||||||||||||  |||| ||||| ||  | ||| ||| ||| | | ||||||| || ||||| | ||| |||| |||||    
T  26729042 gcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcat 26728943  T
Q  108 caatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 203  Q
    ||||||| ||||||||||||||||||   || |||||||||||||  |||||||||||||  |||||||||||||| ||||| || ||||||||||    
T  26728942 caatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacactt 26728847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27604797 - 27604999
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||| ||||||||||||||||||||||||||  | ||||| |||||| |||||| || ||  | ||||||||| ||||||||   |||||||    
T  27604797 agaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatca 27604896  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || || ||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || || |||||||    
T  27604897 ttttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaaca 27604996  T
Q  201 ctt 203  Q
    |||    
T  27604997 ctt 27604999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26142960 - 26142759
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| |||||||||    
T  26142960 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaagatca 26142861  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||||||||| ||  | |||||||||||| | || ||||| |||||||  || || ||   ||  |||||||||||||||||||| ||||||||||    
T  26142860 ttatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaaactgaggaaca 26142761  T
Q  201 ct 202  Q
    ||    
T  26142760 ct 26142759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 31284382 - 31284181
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||||||||||||||  ||||||||| || ||||||||  |||| ||||||||| | ||| | | ||| | ||||||||| || ||||| | ||| ||||    
T  31284382 gaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcac 31284283  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
     |||||||||||| ||||||||||||||||||   || ||||||||||||| ||| |||||||| |  ||||||||||| |||||||| || ||||| ||    
T  31284282 tatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatac 31284183  T
Q  202 tt 203  Q
    ||    
T  31284182 tt 31284181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26884258 - 26884056
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| ||||||||| ||||||| |  |||||||||||| |||||||||||||| ||||||  | ||| | |||||||||   ||||||   ||||| |    
T  26884258 agaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatga 26884159  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||||||||| |||||||||||||||| |   || |||||||||||||  ||||||||||| |  ||||||||||| || ||||| ||||||||||    
T  26884158 ttatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaaca 26884059  T
Q  201 ctt 203  Q
    |||    
T  26884058 ctt 26884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27229327 - 27229125
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||   |||||| |||||| ||||||| | ||| | ||||||||| |||||||| | |||||||    
T  27229327 agaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaagatca 27229228  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |||||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || || |||||||    
T  27229227 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaaca 27229128  T
Q  201 ctt 203  Q
    |||    
T  27229127 ctt 27229125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 25538635 - 25538434
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||| |||||||||| ||| ||||||||| ||| | ||||||||| |||||||| |||||||||    
T  25538635 agaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatca 25538536  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||| ||||| ||    |||||||||||| | || ||||| |||||||  || || ||   ||  |||||||||||||||||||| ||||||||||    
T  25538535 ttatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaaactgaggaaca 25538436  T
Q  201 ct 202  Q
    ||    
T  25538435 ct 25538434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 25579814 - 25579613
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| | |||||||    
T  25579814 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatca 25579715  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||||| ||| ||  | |||||||||||| | || ||||| |||||||  || || |||  ||  |||||||||||||| ||||| ||||||||||    
T  25579714 ttatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaagtgttgcgagtgtcactgcctctgaaactgaggaaca 25579615  T
Q  201 ct 202  Q
    ||    
T  25579614 ct 25579613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 25481837 - 25481636
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||| ||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| | |||||||    
T  25481837 agaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatca 25481738  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| ||  | |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||  |||||||||    
T  25481737 ttttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaattgaggaaca 25481638  T
Q  201 ct 202  Q
    ||    
T  25481637 ct 25481636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26048940 - 26048739
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  |||||||||| ||| ||||||||| |   | ||||||||| |||||||| |||||||||    
T  26048940 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaagatca 26048841  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||||||||| ||    ||||||||||||  ||| ||||| |||||||  || || |||  ||  |||||||||||||||||||| ||||||||||    
T  26048840 ttatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaaca 26048741  T
Q  201 ct 202  Q
    ||    
T  26048740 ct 26048739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26056021 - 26055820
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||   ||||||||| ||| ||||||||| ||| ||||||||||| |||||||| | |||||||    
T  26056021 agaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaagatca 26055922  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |  |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||  |||||||||    
T  26055921 ttttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaaatgaggaaca 26055822  T
Q  201 ct 202  Q
    ||    
T  26055821 ct 26055820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26070109 - 26069908
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  |||||||||| ||| ||||||||| |   | ||||||||| |||||||| |||||||||    
T  26070109 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaagatca 26070010  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
      |||||||||||| ||    ||||||||||||  ||| ||||| |||||||  || || |||  ||  |||||||||||||||||||| ||||||||||    
T  26070009 ttatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaaca 26069910  T
Q  201 ct 202  Q
    ||    
T  26069909 ct 26069908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26075991 - 26075790
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||   ||||||||| ||| ||||||||| ||| ||||||||||| |||||||| | |||||||    
T  26075991 agaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaagatca 26075892  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || |  |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||  |||||||||    
T  26075891 ttttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaattgaggaaca 26075792  T
Q  201 ct 202  Q
    ||    
T  26075791 ct 26075790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26656084 - 26655882
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  | |||||||||||| |||| || | ||| | ||||||||| ||||||||   |||||||    
T  26656084 agaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaagatca 26655985  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || ||||||||||| |||   || ||||||||||||| ||| || |||||||  || |||||| ||||||| || ||||||||||    
T  26655984 ttgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaaca 26655885  T
Q  201 ctt 203  Q
    |||    
T  26655884 ctt 26655882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26762055 - 26761853
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| |||||||||  |||||| |  |||||||||||  | |||||||||||| |||| || | ||| | ||||||||| ||||||||   |||||||    
T  26762055 agaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaagatca 26761956  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || ||||||||||| |||   || ||||||||||||| ||| || |||||||  || |||||| ||||||| || ||||||||||    
T  26761955 ttgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaaca 26761856  T
Q  201 ctt 203  Q
    |||    
T  26761855 ctt 26761853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28139636 - 28139442
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||| ||||||||||| || |||||  |||||||||||||| | || || | ||||| ||  ||||| || ||||  | ||| ||     
T  28139636 agaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttttacgagtgacggtgatatttcgtcacctccttgaagctcc 28139537  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgag 195  Q
    | ||||||||| || |||||||||||   ||||   || || ||||||||||  ||||||||||||  ||||||||||||||| |||||||||||    
T  28139536 ctatcatcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctctgaagctgag 28139442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 25507002 - 25507171
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    ||||||||||||||||||||||  || |||||||||||  |||||||||||||| |  |||| | ||| | ||||||||| |||||||| |  |||||||    
T  25507002 gaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggcgatgacgactgatggtgtgatttcatctcctcttttcagatcac 25507101  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtc 177  Q
    |||||||||      |||| |||||||||||||  || ||| |||||||||||| ||| |||| |  |||||||||    
T  25507102 aatcatcaa------tgtgaattcccttgtcatatagagccgtgtagagatggctagtaaaacggctacgagtgtc 25507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 26861710 - 26861514
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||||||||||||||  ||||||||||||||| |||||| |||| ||||||||| | ||| | | |||   | ||||||| || ||||| | ||| ||||    
T  26861710 gaagaggcatagttggcagaaaacacaggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcac 26861611  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaa 198  Q
     |||||| ||||| ||||| ||||||||||||   || |||||||||||||  || || ||||| |  ||||||||||| || ||||| ||||||||    
T  26861610 gatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaa 26861514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 27338185 - 27338357
Alignment:
Q  29 ggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaatgaatgtgtggattccct 128  Q
    ||||| |||||  |||| ||||||||| ||||||||| ||| | |||| |||| |||||||| ||||||||    ||||||||||| || | ||||||||    
T  27338185 ggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccct 27338284  T
Q  129 tgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
    |||||   || ||||||||||||| ||| || ||||||| | |||||||| || |||| || |||||||||||    
T  27338285 tgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacac 27338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 27398925 - 27399097
Alignment:
Q  29 ggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaatgaatgtgtggattccct 128  Q
    ||||| |||||  |||| ||||||||| ||||||||| ||| | |||| |||| |||||||| ||||||||    ||||||||||| || | ||||||||    
T  27398925 ggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccct 27399024  T
Q  129 tgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
    |||||   || ||||||||||||| ||| || ||||||| | |||||||| || |||| || |||||||||||    
T  27399025 tgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacac 27399097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28227045 - 28226917
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| ||||| |||||||| || |||||||| |||||  ||||||||||||||||||||| || ||| ||||| ||||| || ||||  | ||| ||     
T  28227045 agaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctct 28226946  T
Q  101 caatcatcaatgaatgtgtggattccctt 129  Q
    | |||||||| ||||||||| ||||||||    
T  28226945 ctatcatcaaagaatgtgtgaattccctt 28226917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 28234659 - 28234529
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| ||||| |||||||| || |||||||| |||||  |||| ||||||||| |||||| || ||| | ||| ||||| |||||||  | ||| ||     
T  28234659 agaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctcc 28234560  T
Q  101 caatcatcaatgaatgtgtggattcccttgt 131  Q
    |  ||||||||||| ||||||||||||||||    
T  28234559 ctgtcatcaatgaaggtgtggattcccttgt 28234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26823935 - 26823881
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatg 55  Q
    ||||||||||||||||  |||||||||||||||||||||  |||| |||||||||    
T  26823935 agaagaggcatagttggcagaaaacacaggaataaaaatcctagactcttcaatg 26823881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 27531361 - 27531491
Alignment:
Q  73 tgtgatttcttctcctctctcaagatcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacga 172  Q
    ||||||||| |||||||| | |||||||   ||||||||||| || | |||||||||||||   || |||||||||||||  || || |||||||  |||    
T  27531361 tgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcga 27531460  T
Q  173 gtgtcactgcccctgaagctgaggaacactt 203  Q
    |||||   |||||| || |||||||||||||    
T  27531461 gtgtccgcgcccctaaaactgaggaacactt 27531491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 29273862 - 29274059
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| | | ||| ||| ||||||| || ||||| | ||| |||    
T  29273862 agaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagtgatgatttgatttcatcccctctttgaagttca 29273961  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaa 198  Q
    | |||||||||||| ||||||||||||||||||   || | |||||||||||||||| | ||||||||||||||||||| ||| || ||| |||||||    
T  29273962 cgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaa 29274059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18724164 - 18724366
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  || |||    
T  18724164 agaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtca 18724263  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |  ||||||||||| ||||||||||||||||||   || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  18724264 cggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaaca 18724363  T
Q  201 ctt 203  Q
    |||    
T  18724364 ctt 18724366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18731583 - 18731785
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  || |||    
T  18731583 agaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtca 18731682  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |  ||||||||||| ||||||||||||||||||   || ||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18731683 cggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 18731782  T
Q  201 ctt 203  Q
    |||    
T  18731783 ctt 18731785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18679646 - 18679848
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  || |||    
T  18679646 agaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtca 18679745  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |  ||||||||||| ||||||||||| ||||||   || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  18679746 cggtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaaca 18679845  T
Q  201 ctt 203  Q
    |||    
T  18679846 ctt 18679848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18699479 - 18699681
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    ||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || || || |  || |||    
T  18699479 agaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtca 18699578  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |  ||||||||||| ||||||||||||||||||   || || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  18699579 cggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaaca 18699678  T
Q  201 ctt 203  Q
    |||    
T  18699679 ctt 18699681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18655556 - 18655758
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||||||||||||||||||||||||||||||||| ||  |||| |||| |||| | ||| | | ||| | | ||||||| || || || |  || |||    
T  18655556 agaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcagctca 18655655  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
    |  ||||||||||| ||||||||||||||||||   || || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  18655656 cggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaaca 18655755  T
Q  201 ctt 203  Q
    |||    
T  18655756 ctt 18655758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 14452 - 14649
Alignment:
Q  6 aggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatc 105  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||||   ||    
T  14452 aggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtc 14551  T
Q  106 atcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 203  Q
    ||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || |||| ||||||||    
T  14552 atcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacactt 14649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 3513 - 3716
Alignment:
Q  1 agaagaggcatag-ttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatc 99  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | ||||||    
T  3513 agaagaggcataggttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatc 3612  T
Q  100 acaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaac 199  Q
    |   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || || ||||||    
T  3613 attgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaac 3712  T
Q  200 actt 203  Q
    ||||    
T  3713 actt 3716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 13725 - 13926
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  13725 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 13824  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || |||||||||||    
T  13825 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 13924  T
Q  202 tt 203  Q
    ||    
T  13925 tt 13926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4763 - 4965
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||| ||||||||  ||||||||||||||||||||||||  ||||||| |||||| |||||   |  || | ||||||||| |||||||| | |||||||    
T  4763 agaaaaggcatagaagatagaaaacacaggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatca 4862  T
Q  101 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaaca 200  Q
       ||||||||||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| ||||||| || ||||||||||    
T  4863 ttgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaaca 4962  T
Q  201 ctt 203  Q
    |||    
T  4963 ctt 4965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 10 - 211
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  10 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 109  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || || ||||||||    
T  110 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T
Q  202 tt 203  Q
    ||    
T  210 tt 211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 7619 - 7418
Alignment:
Q  2 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 101  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  7619 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 7520  T
Q  102 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 201  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| ||||||| || || ||||||||    
T  7519 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T
Q  202 tt 203  Q
    ||    
T  7419 tt 7418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 27543 - 27415
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| ||||| |||||||| || |||||||| |||||  ||||||||||||||||||||| || ||| ||||| ||||| || ||||  | ||| ||     
T  27543 agaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctct 27444  T
Q  101 caatcatcaatgaatgtgtggattccctt 129  Q
    | |||||||| ||||||||| ||||||||    
T  27443 ctatcatcaaagaatgtgtgaattccctt 27415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 34820 - 34690
Alignment:
Q  1 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 100  Q
    |||||| ||||| |||||||| || |||||||| |||||  |||| ||||||||| |||||| || ||| | ||| ||||| |||||||  | ||| ||     
T  34820 agaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctcc 34721  T
Q  101 caatcatcaatgaatgtgtggattcccttgt 131  Q
    |  ||||||||||| ||||||||||||||||    
T  34720 ctgtcatcaatgaaggtgtggattcccttgt 34690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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