View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_high_7 (Length: 253)

Name: NF1411_high_7
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_high_7
NF1411_high_7
[»] chr7 (13 HSPs)
chr7 (16-213)||(4845713-4845910)
chr7 (44-182)||(4637082-4637220)
chr7 (45-167)||(4631153-4631275)
chr7 (16-213)||(4711773-4711970)
chr7 (44-212)||(4672928-4673096)
chr7 (60-173)||(4864163-4864276)
chr7 (16-175)||(4667138-4667297)
chr7 (61-201)||(4643949-4644089)
chr7 (44-219)||(4815959-4816134)
chr7 (44-182)||(4783567-4783705)
chr7 (16-129)||(4663191-4663301)
chr7 (60-173)||(4696931-4697044)
chr7 (44-167)||(4653745-4653868)
[»] chr4 (1 HSPs)
chr4 (47-173)||(18925483-18925609)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 4845910 - 4845713
Alignment:
Q  16 aaatagtttagatgatcacttccataaacacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 115  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845910 aaatagtttagatgatcacttccataaaaacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 4845811  T
Q  116 ctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  4845810 ctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtca 4845713  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 4637082 - 4637220
Alignment:
Q  44 cacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 143  Q
    ||||||||||||||  ||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4637082 cacttgatacactagatgggtactctttctccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatcatcacttggtggaacttgatt 4637181  T
Q  144 ttcaccaacattgactctataaaccatctccaaatcttt 182  Q
    || |||||| |||||||||||||||||||||||| ||||    
T  4637182 ttgaccaacgttgactctataaaccatctccaaagcttt 4637220  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 4631153 - 4631275
Alignment:
Q  45 acttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattt 144  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  4631153 acttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcataatttggtggaacttgattt 4631252  T
Q  145 tcaccaacattgactctataaac 167  Q
    |||||| | ||||||||||||||    
T  4631253 tcaccagcgttgactctataaac 4631275  T

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Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 4711970 - 4711773
Alignment:
Q  16 aaatagtttagatgatcacttccataaacacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 115  Q
    ||||||||| |||||||||||||||||||| |||||||||| | |||||||||||| |||| |||| ||||||||||| |||||||||| ||||||||||    
T  4711970 aaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatac 4711871  T
Q  116 ctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtca 213  Q
    ||||||| |   ||||| |||||||||||| |||||| ||||||||||| ||||| |||||| |||| || ||  |||||| ||||||  ||||||||    
T  4711870 ctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtca 4711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 4672928 - 4673096
Alignment:
Q  44 cacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 143  Q
    ||||||||||||||  |||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||  ||| |||||||| |    
T  4672928 cacttgatacactaagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacataccagtatcgtcacccggtggaacttgact 4673027  T
Q  144 ttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtc 212  Q
    ||||||||| ||||||||||||||||| |||||| |||| || ||  |||||| ||||||  |||||||    
T  4673028 ttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtc 4673096  T

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Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 4864163 - 4864276
Alignment:
Q  60 tggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgact 159  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| |||||||| ||||||| |||||||||    
T  4864163 tggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcatcacccggtggaacttgactttcaccgacattgact 4864262  T
Q  160 ctataaaccatctc 173  Q
    ||||||||| ||||    
T  4864263 ctataaaccgtctc 4864276  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 4667138 - 4667297
Alignment:
Q  16 aaatagtttagatgatcacttccataaacacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 115  Q
    ||||||||| ||||||||  |||| ||  ||||||||  || | |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4667138 aaatagtttggatgatcaggtccaaaataacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacatac 4667237  T
Q  116 ctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctcca 175  Q
    | ||||| ||||  ||| |||||||| ||||||||||  |||||||||||||| ||||||    
T  4667238 cagtatcgtcaccaggtggaacttgactttcaccaacgctgactctataaaccgtctcca 4667297  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 4643949 - 4644089
Alignment:
Q  61 ggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactc 160  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |   ||||| |||||||| ||  |||||| |||||||    
T  4643949 ggatattgtttctccaagtaacgaggataatcattgtcccaattacgaaacatacctgtatcttggtttggtggaacttgaattcgaccaacgttgactc 4644048  T
Q  161 tataaaccatctccaaatctttatcatttcgaatttcgtat 201  Q
    ||||||||||||||||| |||| |||||  |||||| ||||    
T  4644049 tataaaccatctccaaagctttgtcattaagaatttggtat 4644089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 4816134 - 4815959
Alignment:
Q  44 cacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 143  Q
    ||||||||||||||  ||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |   ||| | ||||||||||    
T  4816134 cacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgatt 4816035  T
Q  144 ttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtcagaacca 219  Q
    || |||||| ||||||||||||||| |||| ||| |||| |  ||  ||| || ||||||  ||||||||||||||    
T  4816034 ttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaacca 4815959  T

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Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 4783705 - 4783567
Alignment:
Q  44 cacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 143  Q
    ||||||||||||||  ||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |   ||| | ||||||||||    
T  4783705 cacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgatt 4783606  T
Q  144 ttcaccaacattgactctataaaccatctccaaatcttt 182  Q
    || |||||| ||||||||||||||| |||| ||| ||||    
T  4783605 ttgaccaacgttgactctataaaccgtctctaaagcttt 4783567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 4663191 - 4663301
Alignment:
Q  16 aaatagtttagatgatcacttccataaacacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 115  Q
    |||||||||||||||||   |||| || ||||||||||||| | |||||||||| ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  4663191 aaatagtttagatgatc---tccaaaatcacttgatacactttgtggatattctatctccaagtaacgaggagaatcattttcccaataacgaaacatac 4663287  T
Q  116 ctgtatcatcactt 129  Q
    ||||||||||||||    
T  4663288 ctgtatcatcactt 4663301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 4697044 - 4696931
Alignment:
Q  60 tggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgact 159  Q
    |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |   ||||| ||||||||||  |||| |||||||||    
T  4697044 tggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacataccagtatcttggtttggtggaacttgattgccacccacattgact 4696945  T
Q  160 ctataaaccatctc 173  Q
    ||||||||| ||||    
T  4696944 ctataaaccgtctc 4696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 4653745 - 4653868
Alignment:
Q  44 cacttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 143  Q
    |||||||||||||   |||||||| |||||| |||||||||||| |||| || |||||||| ||||||| ||| |||||     ||||| ||||||||||    
T  4653745 cacttgatacacttagtggatattgtttctctaagtaacgaggataatcgttatcccaattacgaaacaaaccagtatctaggtttggtggaacttgatt 4653844  T
Q  144 ttcaccaacattgactctataaac 167  Q
    ||||||||| ||||| ||||||||    
T  4653845 ttcaccaacgttgacactataaac 4653868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 18925609 - 18925483
Alignment:
Q  47 ttgatacactatttggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttc 146  Q
    ||||||||||   |||||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||| |||| |||| || |||||||||| ||    
T  18925609 ttgatacacttagtggatattgtttctccaagtaacgaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatc 18925510  T
Q  147 accaacattgactctataaaccatctc 173  Q
    ||||||  |||||||||||||| ||||    
T  18925509 accaacgctgactctataaaccgtctc 18925483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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