View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_low_1 (Length: 570)

Name: NF1411_low_1
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_low_1
NF1411_low_1
[»] chr5 (29 HSPs)
chr5 (11-555)||(29224748-29225296)
chr5 (120-171)||(24498579-24498630)
chr5 (127-185)||(18981190-18981248)
chr5 (122-172)||(26675960-26676010)
chr5 (122-172)||(26947568-26947618)
chr5 (121-202)||(5107229-5107310)
chr5 (131-180)||(7713538-7713587)
chr5 (120-185)||(18872662-18872727)
chr5 (119-183)||(35131109-35131173)
chr5 (135-175)||(42659587-42659627)
chr5 (151-194)||(18697776-18697818)
chr5 (127-194)||(25603992-25604059)
chr5 (120-202)||(11637556-11637638)
chr5 (122-180)||(13864341-13864399)
chr5 (120-174)||(29695010-29695064)
chr5 (127-169)||(36170057-36170099)
chr5 (120-194)||(40715941-40716015)
chr5 (130-164)||(42178827-42178861)
chr5 (130-171)||(5614770-5614811)
chr5 (122-183)||(8544992-8545053)
chr5 (122-183)||(23118054-23118115)
chr5 (127-194)||(25861939-25862003)
chr5 (120-161)||(25928909-25928950)
chr5 (326-363)||(29146715-29146752)
chr5 (122-171)||(36623189-36623238)
chr5 (122-174)||(26034620-26034672)
chr5 (120-180)||(33369419-33369479)
chr5 (131-183)||(37073771-37073823)
chr5 (130-182)||(38370755-38370807)
[»] chr1 (25 HSPs)
chr1 (120-183)||(42146310-42146373)
chr1 (119-183)||(51046136-51046200)
chr1 (127-194)||(47719099-47719166)
chr1 (126-171)||(4859084-4859129)
chr1 (127-179)||(31759900-31759952)
chr1 (130-179)||(44287148-44287197)
chr1 (127-183)||(37050931-37050987)
chr1 (154-202)||(38000073-38000121)
chr1 (127-194)||(11410629-11410696)
chr1 (127-194)||(51067886-51067953)
chr1 (119-169)||(41182623-41182673)
chr1 (120-194)||(41973250-41973324)
chr1 (149-183)||(46012399-46012433)
chr1 (128-189)||(5468851-5468912)
chr1 (131-172)||(13953888-13953929)
chr1 (122-175)||(14556569-14556622)
chr1 (127-180)||(23045193-23045246)
chr1 (120-185)||(28213908-28213973)
chr1 (120-177)||(48681942-48681999)
chr1 (120-169)||(49843429-49843478)
chr1 (147-179)||(422569-422601)
chr1 (119-183)||(2613716-2613780)
chr1 (127-183)||(32433098-32433154)
chr1 (127-171)||(47071973-47072017)
chr1 (120-180)||(49222811-49222871)
[»] chr4 (29 HSPs)
chr4 (122-202)||(50380820-50380900)
chr4 (122-183)||(6459927-6459988)
chr4 (120-183)||(51436609-51436672)
chr4 (122-180)||(36569170-36569228)
chr4 (126-180)||(39146643-39146697)
chr4 (120-180)||(14202485-14202545)
chr4 (127-171)||(39595952-39595996)
chr4 (131-183)||(41536928-41536980)
chr4 (127-174)||(47704584-47704631)
chr4 (127-165)||(20515727-20515765)
chr4 (120-166)||(24837493-24837539)
chr4 (128-182)||(37422194-37422248)
chr4 (127-169)||(46779139-46779181)
chr4 (130-180)||(50668345-50668395)
chr4 (114-171)||(2587715-2587772)
chr4 (122-171)||(32923245-32923294)
chr4 (120-173)||(38340333-38340386)
chr4 (127-180)||(42773054-42773107)
chr4 (127-172)||(44857200-44857245)
chr4 (127-180)||(49952575-49952628)
chr4 (127-172)||(54587902-54587947)
chr4 (127-183)||(7371551-7371607)
chr4 (121-169)||(8737725-8737773)
chr4 (120-208)||(25593541-25593628)
chr4 (131-171)||(37381246-37381286)
chr4 (120-180)||(43374278-43374338)
chr4 (131-175)||(52693807-52693851)
chr4 (127-187)||(52699375-52699435)
chr4 (119-163)||(56309323-56309367)
[»] chr2 (27 HSPs)
chr2 (120-194)||(44026603-44026677)
chr2 (128-180)||(19159944-19159996)
chr2 (118-194)||(19967411-19967487)
chr2 (120-180)||(38334639-38334699)
chr2 (120-183)||(8761567-8761630)
chr2 (120-194)||(20455886-20455960)
chr2 (119-168)||(10977077-10977126)
chr2 (140-185)||(17394689-17394734)
chr2 (120-164)||(11846392-11846436)
chr2 (119-174)||(3196554-3196609)
chr2 (120-171)||(18678132-18678183)
chr2 (120-175)||(31837947-31838002)
chr2 (120-183)||(33063981-33064044)
chr2 (127-194)||(41682380-41682446)
chr2 (122-180)||(9519720-9519778)
chr2 (120-182)||(13196695-13196757)
chr2 (120-194)||(22523004-22523078)
chr2 (120-202)||(34977199-34977281)
chr2 (136-202)||(41542967-41543033)
chr2 (127-180)||(5168585-5168638)
chr2 (119-180)||(7537104-7537165)
chr2 (132-181)||(7539037-7539086)
chr2 (127-180)||(7772466-7772519)
chr2 (120-169)||(8775265-8775314)
chr2 (127-171)||(20239345-20239389)
chr2 (127-163)||(38622941-38622977)
chr2 (130-194)||(41853370-41853434)
[»] chr8 (25 HSPs)
chr8 (130-175)||(3456832-3456877)
chr8 (120-176)||(40316851-40316907)
chr8 (120-194)||(7380039-7380113)
chr8 (119-209)||(8717452-8717542)
chr8 (120-194)||(35682684-35682758)
chr8 (127-202)||(574386-574461)
chr8 (119-174)||(18959143-18959198)
chr8 (130-189)||(26695302-26695361)
chr8 (127-194)||(40795379-40795446)
chr8 (120-194)||(6447184-6447258)
chr8 (117-171)||(39975482-39975536)
chr8 (129-171)||(41603065-41603107)
chr8 (120-173)||(10732788-10732841)
chr8 (130-175)||(12133548-12133593)
chr8 (131-188)||(38489200-38489257)
chr8 (127-180)||(45049577-45049630)
chr8 (120-172)||(1230675-1230727)
chr8 (151-183)||(11670777-11670809)
chr8 (115-171)||(17062354-17062410)
chr8 (115-171)||(17585948-17586004)
chr8 (128-192)||(24687782-24687844)
chr8 (120-180)||(27718900-27718960)
chr8 (122-194)||(28580941-28581013)
chr8 (120-180)||(29293172-29293232)
chr8 (127-171)||(41625196-41625240)
[»] chr7 (24 HSPs)
chr7 (122-183)||(429181-429242)
chr7 (130-202)||(27270240-27270312)
chr7 (127-194)||(9893072-9893139)
chr7 (120-171)||(32496881-32496932)
chr7 (127-194)||(34000264-34000331)
chr7 (127-182)||(47960898-47960953)
chr7 (130-180)||(32855525-32855575)
chr7 (120-194)||(39706615-39706689)
chr7 (131-173)||(44639647-44639689)
chr7 (127-180)||(41132446-41132499)
chr7 (150-194)||(16198408-16198452)
chr7 (130-202)||(27263346-27263418)
chr7 (128-168)||(35751389-35751429)
chr7 (128-171)||(21580819-21580862)
chr7 (127-194)||(48527192-48527259)
chr7 (120-202)||(4905271-4905353)
chr7 (119-200)||(2622319-2622400)
chr7 (149-202)||(2962710-2962763)
chr7 (140-181)||(23205367-23205408)
chr7 (120-164)||(12167402-12167446)
chr7 (127-171)||(15015243-15015287)
chr7 (135-175)||(24099246-24099286)
chr7 (120-180)||(29726795-29726855)
chr7 (130-194)||(48837872-48837936)
[»] chr6 (16 HSPs)
chr6 (120-169)||(9311947-9311996)
chr6 (120-180)||(13496111-13496171)
chr6 (120-183)||(9665305-9665368)
chr6 (119-194)||(28951393-28951468)
chr6 (120-194)||(8916466-8916540)
chr6 (127-180)||(12904323-12904376)
chr6 (117-193)||(2213289-2213365)
chr6 (127-194)||(8629688-8629755)
chr6 (120-183)||(10902335-10902398)
chr6 (120-183)||(11148207-11148270)
chr6 (120-193)||(12336319-12336392)
chr6 (127-180)||(23635720-23635773)
chr6 (119-180)||(24438288-24438349)
chr6 (135-183)||(6283946-6283994)
chr6 (127-171)||(9977059-9977103)
chr6 (144-180)||(12459747-12459783)
[»] chr3 (15 HSPs)
chr3 (120-191)||(21331412-21331483)
chr3 (126-180)||(17755122-17755176)
chr3 (126-180)||(19056442-19056496)
chr3 (122-171)||(10843796-10843845)
chr3 (120-184)||(53633619-53633683)
chr3 (120-183)||(7827503-7827566)
chr3 (122-185)||(46337231-46337294)
chr3 (127-185)||(47099036-47099094)
chr3 (120-202)||(48376830-48376912)
chr3 (130-171)||(21160057-21160098)
chr3 (131-172)||(43630432-43630473)
chr3 (155-188)||(45254261-45254294)
chr3 (130-194)||(1743982-1744046)
chr3 (127-183)||(5941297-5941353)
chr3 (127-171)||(42784959-42785003)
[»] scaffold0070 (1 HSPs)
scaffold0070 (128-185)||(42933-42990)
[»] scaffold0445 (1 HSPs)
scaffold0445 (127-194)||(4472-4539)
[»] scaffold0312 (1 HSPs)
scaffold0312 (147-179)||(7971-8003)
[»] scaffold0062 (1 HSPs)
scaffold0062 (122-194)||(7471-7542)
[»] scaffold0008 (1 HSPs)
scaffold0008 (127-171)||(122893-122937)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Complemental strand, 29225296 - 29224748
Alignment:
Q  11 catagggtggtacataaggtagaaaagtaatcaatgaatcctagtaatcaatgaatccactctcatttattttccgtgttgctatgttgacttctcatgc 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||     
T  29225296 catagagtggtacataaggtagaaaagtaatcaatgaatcctagtaatcaatgaatccacactcatttattttcagtgttgctatgttgacttctcatgt 29225197  T
Q  111 aa---------gtaaaaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaa 201  Q
    ||         |||||| |||||| ||| ||||||||||    ||| | |||  ||||||||||||||||| |  |||||||||  | ||||| |||||     
T  29225196 aaatattcaatgtaaaagtcctcgtgagtttaactcaat----atggacaatgtataatatatgtaaggtttgaggttcgaatcctgaccaccataaaag 29225101  T
Q  202 ataaatattccatgtaaaaaataattagtattttcagcattattttatcttgaaatgctaatccatgtcaacatcctgatttgctatgctatgtttctta 301  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29225100 aaaaatattccatgtaaaaaataattagtattttcagcattattttatcttgaaatgctaatccatgtcaacatcctgatttgctatgctatgtttctta 29225001  T
Q  302 cagccaacatgtttctcatataagatcaattaaggaaacaaaagtagaacaataaatgtttacaagtatcctagacataggaaagggaactagttgacag 401  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29225000 cagccaacatgtttctcatataacatcaattaaggaaacaaaagtagaacaataaatgttt-caagtatcctagacataggaaagggaactagttgacag 29224902  T
Q  402 tcctaacaaaacctcaaatgtagtactaaataaaattggaaatgtatatcaaaatagtgtagcacaagtattagataaaattatatctcacttactttaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224901 tcctaacaaaacctcaaatgtagtactaaataaaattggaaatgtatatcaaaatagtgtagcacaagtattagataaaattatatctcacttactttaa 29224802  T
Q  502 agaattagtcattataattgtgcatgcgggtactttgttttaccacaaacattt 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224801 agaattagtcattataattgtgcatgcgggtactttgttttaccacaaacattt 29224748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 24498579 - 24498630
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||| |||||||||||| |||||||||||||| ||||| |||||||||||    
T  24498579 tcctcgtgagcttaactcagttgatatgaataatgcataaaatatgtaaggt 24498630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 18981248 - 18981190
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    ||||||||||||| || || ||| ||| ||||||||||||||||||||| |||||||||    
T  18981248 gagcttaactcaaatggtaagaacaatgcataatatatgtaaggttcggggttcgaatc 18981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 26676010 - 26675960
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||| |||||||| ||||||| || ||||||||||||||||||||||||||    
T  26676010 ctcgtgagcttaattcaattgttaggaataatacataatatatgtaaggtt 26675960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 26947618 - 26947568
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||| |||||||| ||||||| || ||||||||||||||||||||||||||    
T  26947618 ctcgtgagcttaattcaattgttaggaataatacataatatatgtaaggtt 26947568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 5107310 - 5107229
Alignment:
Q  121 cctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| ||||| ||  ||||||| | || ||||| |||||||    
T  5107310 cctcgtgagcttaactcagttggtatgaataatgcataatatatgcaaggtccgaggttcgaaccccgaccaccataaaaaa 5107229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 7713538 - 7713587
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||| |||||||||||||| ||||||||||| |||||| |||||||    
T  7713538 ttaactcagttgatatgaataatgcataatatatgcaaggtttggagttc 7713587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 18872662 - 18872727
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    |||||| |||||||||||| ||| |||| | ||| ||||||||||| ||||||||| |||||||||    
T  18872662 tcctcgtgagcttaactcacttgttatggaaaatgcataatatatgcaaggttcggggttcgaatc 18872727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 35131109 - 35131173
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||  ||||||||||| ||| |||  ||||||||||| ||||| |||||||||||||||||    
T  35131109 atcctcgtaagcttaactcagttgttatcgataatacataaaatatgcaaggttcggagttcgaa 35131173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 42659587 - 42659627
Alignment:
Q  135 ctcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  42659587 ctcaattgatataaataatgcataatatatgtaaggttcgg 42659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 18697776 - 18697818
Alignment:
Q  151 aatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  18697776 aatacataatatatgtaacgttcggagttcgaat-tcggccacc 18697818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 25604059 - 25603992
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||| |||| |||||||| | | | ||||||||||| ||||||||| ||||||||| ||||||||    
T  25604059 gagcttagctcagttgatatggacagtgcataatatatgcaaggttcggggttcgaatcccggccacc 25603992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 11637638 - 11637556
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||||| |||||||||||| ||| |||| | ||| ||||| ||||| ||||||||| ||||||| | || ||||| |||||||    
T  11637638 tcctcgtgagcttaactcagttggtatggacaatgcataaaatatgcaaggttcggggttcgaaccccgaccaccataaaaaa 11637556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 13864341 - 13864399
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||| |||||||||||| ||| |||||| ||||||||||||||| ||||| ||| ||||    
T  13864341 ctcgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttc 13864399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 29695010 - 29695064
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcg 174  Q
    |||||| || ||||||||| |||||||| | ||| ||||||||||||||||||||    
T  29695010 tcctcgtgaccttaactcagttgatatggacaatgcataatatatgtaaggttcg 29695064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 36170057 - 36170099
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    |||||||||||||||| || ||||||| |||||||||||||||    
T  36170057 gagcttaactcaattgctaggaataatgcataatatatgtaag 36170099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 40716015 - 40715941
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||||| ||||||||||||| | ||| ||||||||||| ||||| ||| |||| || | ||||||||    
T  40716015 tcctcgtgagcttagctcaattgatatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacc 40715941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 42178861 - 42178827
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatat 164  Q
    |||||||||||||||| ||||||||||||||||||    
T  42178861 cttaactcaattgataagaataatacataatatat 42178827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 5614770 - 5614811
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  5614770 cttaactcagttgatatggataatgcataatatatgtaaggt 5614811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 8545053 - 8544992
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||| |||||||||||| |||||| | | ||| ||||||||||| ||||| |||||||||||    
T  8545053 ctcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccggagttcgaa 8544992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 23118115 - 23118054
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||| |||||||||||| |||||| | | ||| |||||||||||||||||| || |||||||    
T  23118115 ctcgtgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttcgaa 23118054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 25862003 - 25861939
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||| |||||||| |||||||||   |||||||||||||||| |||||||| || | ||||||||    
T  25862003 gagcttagctcaattggtatgaataa---ataatatatgtaaggtccggagttcaaaccccggccacc 25861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 25928909 - 25928950
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataata 161  Q
    |||||| ||||||||||||||||||||| | |||||||||||    
T  25928909 tcctcgtgagcttaactcaattgatatggacaatacataata 25928950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 29146715 - 29146752
Alignment:
Q  326 atcaattaaggaaacaaaagtagaacaataaatgttta 363  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  29146715 atcatttaaggaaacaaaagtagaaaaataaatgttta 29146752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 36623238 - 36623189
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||| |||||    
T  36623238 ctcgtgagcttaactcagttgataagaataatgcataatatatgcaaggt 36623189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 26034672 - 26034620
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcg 174  Q
    |||| |||||||||||| ||| |||||| ||| ||||||||||| ||||||||    
T  26034672 ctcgtgagcttaactcagttggtatgaacaatgcataatatatgaaaggttcg 26034620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 33369479 - 33369419
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| |||||||||||| ||| |||||| |||||||||| |||| || |||||| ||||    
T  33369479 tcctcgtgagcttaactcagttggtatgaacaatacataatgtatgcaacgttcggggttc 33369419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 37073823 - 37073771
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||| |||| |  || ||||||||||||||||||||| |||||||    
T  37073823 ttaactcaattggtatggactatgcataatatatgtaaggttcggggttcgaa 37073771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 38370755 - 38370807
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcga 182  Q
    |||||||||||| |||| || ||| ||||| ||||||||||| ||||||||||    
T  38370755 cttaactcaattaatataaacaatgcataaaatatgtaaggtccggagttcga 38370807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 42146310 - 42146373
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  42146310 tcctcgtgagcttaactcaattgatacgaataatatataatatatgcaaggttcggagttcgaa 42146373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 51046136 - 51046200
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||| ||| |||||||| ||| |||||| ||||||||| |||||||||||||||||||||||    
T  51046136 atcctcgtgagtttaactcagttggtatgaacaatacataaaatatgtaaggttcggagttcgaa 51046200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 47719166 - 47719099
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| ||| || | ||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  47719166 gagcttaactcagttggtaaggataatgcataatatatgcaaggttcggagttcgaatcccggccacc 47719099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 4859084 - 4859129
Alignment:
Q  126 cgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  4859084 cgagcttaactcagttgataagaataatacataatatatgtaaggt 4859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 31759952 - 31759900
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagtt 179  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||    
T  31759952 gagcttaactcaattgatatggataatgcataatatatgcaaggtccggagtt 31759900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 44287197 - 44287148
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagtt 179  Q
    |||| |||||||| |||||||||||| |||||||| ||||||||||||||    
T  44287197 cttagctcaattggtatgaataatacgtaatatatataaggttcggagtt 44287148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 37050931 - 37050987
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||||||| |||||||||| ||||| ||||| ||||| ||| |||||||    
T  37050931 gagcttaactcaattggtatgaataatgcataaaatatgcaaggtccggggttcgaa 37050987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 38000073 - 38000121
Alignment:
Q  154 acataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||||||    
T  38000073 acataatatatgtaaggttcggggttcgaattccggccaccataaaaaa 38000121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 11410629 - 11410696
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||||  || ||||||||| || |||||    
T  11410629 gagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttcgaatcccgaccacc 11410696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 51067953 - 51067886
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| ||| || ||||||||||||||||||| |||| |||| |||| |||| || |||||    
T  51067953 gagcttaactcagttggtaagaataatacataatatatgcaaggctcggggttcaaatcccgaccacc 51067886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 41182673 - 41182623
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    ||||||| |||||||||||| ||| |||||||||| |||||||| ||||||    
T  41182673 atcctcgtgagcttaactcagttggtatgaataatgcataatatgtgtaag 41182623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 41973250 - 41973324
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||||||||||||| ||||| || | | ||| ||||||||||| ||||| ||| ||||||| | ||||||||    
T  41973250 tcctcgcgagcttaacttaattggtagggacaatgcataatatatgcaaggtccggggttcgaaccccggccacc 41973324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 46012433 - 46012399
Alignment:
Q  149 ataatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||||||||||||| |||||||||||||||||    
T  46012433 ataatacataatatatgcaaggttcggagttcgaa 46012399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 5468851 - 5468912
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcgg 189  Q
    ||||||||||| |||||| |||||||  ||||||||||||| ||| |||||| |||| ||||    
T  5468851 agcttaactcagttgataggaataatgtataatatatgtaaagtttggagtttgaatttcgg 5468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 13953929 - 13953888
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  13953929 ttaactcaattgatatgaacaatgcataatatatgcaaggtt 13953888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 14556622 - 14556569
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    ||||||||||||||||||| |||||||| |||  ||||||||| ||| ||||||    
T  14556622 ctcgcgagcttaactcaatcgatatgaacaatgtataatatatataaagttcgg 14556569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 23045193 - 23045246
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||||||  || ||||||| ||| ||||||||||||||||| ||||||||    
T  23045193 gagcttaactccgttaatatgaacaatgcataatatatgtaaggtccggagttc 23045246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 28213908 - 28213973
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    |||||| |||||||| ||| |||||||  |||||| ||||||||||| || || ||||||||||||    
T  28213908 tcctcgtgagcttaattcagttgatatacataatatataatatatgtgagatttggagttcgaatc 28213973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 48681999 - 48681942
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggag 177  Q
    |||||| ||||||| |||| ||| |||||| ||| ||||||||||| |||||||||||    
T  48681999 tcctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggttcggag 48681942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 49843429 - 49843478
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    |||||| |||||||||||||||| | |||| ||| |||||||||||||||    
T  49843429 tcctcgtgagcttaactcaattggtttgaacaatgcataatatatgtaag 49843478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 422569 - 422601
Alignment:
Q  147 gaataatacataatatatgtaaggttcggagtt 179  Q
    ||||||| |||||||||||||||||||||||||    
T  422569 gaataatgcataatatatgtaaggttcggagtt 422601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 2613716 - 2613780
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||| ||||||| |||| ||| |||| | ||| ||||| ||||||||||||||| |||||||    
T  2613716 atcctcgtgagcttagctcagttggtatggacaatgcataaaatatgtaaggttcggggttcgaa 2613780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 32433154 - 32433098
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||| | |||||||| ||| ||||| |||| |||||||||| |||||||    
T  32433154 gagcttaactcagtcgatatgaaaaatgcataaaatatataaggttcggggttcgaa 32433098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 47072017 - 47071973
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||||||| || ||| ||||||||||||||| |||||    
T  47072017 gagcttaactcaattggtaagaacaatacataatatatgcaaggt 47071973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 49222811 - 49222871
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| ||||||||||||||||||| ||| ||| || |||||||| ||||| ||| ||||    
T  49222811 tcctcgtgagcttaactcaattgataggaacaatgcacaatatatgcaaggtccggggttc 49222871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 50380900 - 50380820
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||| |||||||| ||| ||| |||||| ||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||    
T  50380900 ctcgtgagcttaattcagttggtatgaacaatgcataatatatgtaaggtccggagttcaaatctcgaccaccataaaaaa 50380820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 6459988 - 6459927
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||| |||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||    
T  6459988 ctcgtgagcttaactcagttgatatggacaatgcataatatatgtaaggtccggagttcgaa 6459927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 51436672 - 51436609
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| || ||||||||| |||||| ||| ||| ||||||||||| |||||||||||||||||    
T  51436672 tcctcgtgaacttaactcagttgatacgaacaatgcataatatatgcaaggttcggagttcgaa 51436609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 36569170 - 36569228
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||| ||||||| |||||||  |||||| ||| ||||||||||||||||||||||||||    
T  36569170 ctcgtgagcttagctcaattagtatgaaaaatgcataatatatgtaaggttcggagttc 36569228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 39146643 - 39146697
Alignment:
Q  126 cgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||||||||| |||||||| | ||| ||||||||| ||||||||||||||||    
T  39146643 cgagcttaactcagttgatatggacaatgcataatataagtaaggttcggagttc 39146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 14202545 - 14202485
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| |||||||||||| ||||| || ||||| ||||||||||||||||| ||| ||||    
T  14202545 tcctcgtgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttc 14202485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 39595996 - 39595952
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||    
T  39595996 gagcttagctcaattgatataaataatacataatatatgcaaggt 39595952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 41536928 - 41536980
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||||||||||| | | ||||||||||||||| |||||||| ||||||||    
T  41536928 ttaactcaattgataaggacaatacataatatatgcaaggttcgaagttcgaa 41536980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 47704584 - 47704631
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcg 174  Q
    |||||||||||| ||| ||||||||||  |||||||||||||||||||    
T  47704584 gagcttaactcagttggtatgaataatgtataatatatgtaaggttcg 47704631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 20515765 - 20515727
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatg 165  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  20515765 gagcttaactcaattgataggaatattacataatatatg 20515727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 24837539 - 24837493
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgt 166  Q
    |||||| |||||||||| | |||||||||| ||||||||||||||||    
T  24837539 tcctcgtgagcttaacttagttgatatgaacaatacataatatatgt 24837493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 37422194 - 37422248
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcga 182  Q
    ||||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||    
T  37422194 agcttaactcagttggtattaacaatgcataatatgtgtaaggttcggagttcga 37422248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 46779139 - 46779181
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    ||||||||||||||||||| ||||||| | |||||||||||||    
T  46779139 gagcttaactcaattgataggaataatgcgtaatatatgtaag 46779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 50668345 - 50668395
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||| ||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  50668345 cttaattcagttggtatgaacaatacataatatatgtaaggttcggggttc 50668395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 2587772 - 2587715
Alignment:
Q  114 taaaaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| ||| ||| ||||||| |||||||| |||| ||||| |||||||||||||||||    
T  2587772 taaatatcatcgtgagcttagctcaattggtatggataatgcataatatatgtaaggt 2587715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 32923294 - 32923245
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| |||||||||||| ||| |||||| ||| |||||||||||||||||    
T  32923294 ctcgtgagcttaactcagttggtatgaacaatgcataatatatgtaaggt 32923245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 38340386 - 38340333
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttc 173  Q
    |||||| |||||||||||| ||| |||| | ||||||||| |||||||||||||    
T  38340386 tcctcgtgagcttaactcagttggtatggacaatacataaaatatgtaaggttc 38340333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 42773054 - 42773107
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||| ||||||| |||||||| | ||||||||| ||||||||||||||| ||||    
T  42773054 gagcataactcagttgatatggacaatacataaaatatgtaaggttcggtgttc 42773107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 44857245 - 44857200
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||||||||||||||| |||  ||||||||||||||||| ||||||    
T  44857245 gagcttaactcaattggtatagataatacataatatatgcaaggtt 44857200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 49952628 - 49952575
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||||||||||||| || | ||| ||||||||||||||||| ||| ||||    
T  49952628 gagcttaactcaattgatttggacaatgcataatatatgtaaggtccggggttc 49952575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 54587902 - 54587947
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||| ||||||| |||||||| ||||| ||||||||||||||||||    
T  54587902 gagcataactcagttgatatggataatgcataatatatgtaaggtt 54587947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 7371607 - 7371551
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||| |||||| | | ||||||||||||||| ||||| ||| |||||||    
T  7371607 gagcttaactcagttgataaggacaatacataatatatgcaaggtccggggttcgaa 7371551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 8737725 - 8737773
Alignment:
Q  121 cctcgcgagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    ||||| ||||||  |||||||||||| || |||||||||||||||||||    
T  8737725 cctcgtgagcttcgctcaattgatataaacaatacataatatatgtaag 8737773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 25593628 - 25593541
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaataaata 208  Q
    |||||| ||||||| | ||||||||||| |  || ||||| ||||| |||||||||||||| |||| ||| |||| ||||||| |||||    
T  25593628 tcctcgtgagcttagc-caattgatatggacgatgcataaaatatgcaaggttcggagttcaaatcccggtcaccataaaaaaaaaata 25593541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 37381286 - 37381246
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  37381286 ttaactcaattgatatagataatgcataatatatgtaaggt 37381246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 43374338 - 43374278
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| ||||||| |||| |||||||| | ||| ||||| ||||| ||||||||||||||    
T  43374338 tcctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaaggttcggagttc 43374278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 52693807 - 52693851
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    |||||||| || ||| ||| |||||||||||||||||||||||||    
T  52693807 ttaactcagttaataggaagaatacataatatatgtaaggttcgg 52693851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 52699375 - 52699435
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctc 187  Q
    ||||||| |||||||  || ||||||| ||||||||||||||||||  ||||| |||||||    
T  52699375 gagcttatctcaattagtaagaataatgcataatatatgtaaggttttgagtttgaatctc 52699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 56309367 - 56309323
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatata 163  Q
    ||||||| ||||||||||||||||||||| | ||| |||||||||    
T  56309367 atcctcgtgagcttaactcaattgatatggacaatgcataatata 56309323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 44026603 - 44026677
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| |||||||||||||||| |||| | ||  ||||||||||||||||||||| |||| |||||||| ||||    
T  44026603 tcctcgtgagcttaactcaattggtatggacaacgcataatatatgtaaggttcggggttcaaatctcggtcacc 44026677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 19159944 - 19159996
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgcaaggttcggagttc 19159996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 19967411 - 19967487
Alignment:
Q  118 aatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||| ||||||| |||| |||||||||| ||| |||||||| || |||||||||||||| || |||| |||||    
T  19967411 aatcctcgtgagcttagctcagttgatatgaacaatgcataatatgtgcaaggttcggagttcaaacctcgaccacc 19967487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 38334639 - 38334699
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| ||| |||| ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  38334639 tcctcgtgagattaattcaattggtatgaataatatataatatatgtaaggttcagagttc 38334699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 8761630 - 8761567
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| |||||||||||| ||| |||| | |||||||||||||||||||| | ||||||||||    
T  8761630 tcctcgtgagcttaactcagttggtatggacaatacataatatatgtaagggttggagttcgaa 8761567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 20455886 - 20455960
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||||| |||||||| |||| | ||| ||||||||||| ||||| ||| ||||||||| ||||||||    
T  20455886 tcctcgtgagcttagctcaattggtatggacaatgcataatatatgcaaggtccggggttcgaatcccggccacc 20455960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 10977126 - 10977077
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaa 168  Q
    ||||||| |||||||||||  |||||||||| ||||||||||||||||||    
T  10977126 atcctcgtgagcttaactcggttgatatgaaaaatacataatatatgtaa 10977077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 17394689 - 17394734
Alignment:
Q  140 ttgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||    
T  17394689 ttgataggaataatacataatatatgtaaggttcggggtttgaatc 17394734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 11846392 - 11846436
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatat 164  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||    
T  11846392 tcctcgcgagcttaactcagttggtaggaataatacataatatat 11846436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 3196554 - 3196609
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcg 174  Q
    ||||||| ||||||  |||| |||||||||| ||| ||||||||||||||||||||    
T  3196554 atcctcgtgagctttgctcagttgatatgaacaatgcataatatatgtaaggttcg 3196609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 18678132 - 18678183
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||| |||||||||||||||  |||  |||||||||||||||||||||||    
T  18678132 tcctcgtgagcttaactcaattagtattgataatacataatatatgtaaggt 18678183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 31838002 - 31837947
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    |||||| || ||||||||||||| |||| |||||  ||||||||||||||||||||    
T  31838002 tcctcgtgaacttaactcaattggtatggataatgtataatatatgtaaggttcgg 31837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 33063981 - 33064044
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| ||||||| |||| |||||||| | ||| ||||||||||| ||||| |||||||||||    
T  33063981 tcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaggtccggagttcgaa 33064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 41682446 - 41682380
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| ||| ||| |||||| |||||||||||||||||| || |||| |||||| ||||||    
T  41682446 gagcttaactcagttggtataaataatgcataatatatgtaaggttagg-gttcaaatctcagccacc 41682380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 9519778 - 9519720
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||| ||||||| ||||||||||||| | ||| ||||||||||| |||||||| |||||    
T  9519778 ctcgtgagcttagctcaattgatatggacaatgcataatatatgcaaggttcgaagttc 9519720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 13196695 - 13196757
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcga 182  Q
    |||||| || ||||||||| ||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  13196695 tcctcgtgaacttaactcagttggtatgaacaatgcataatatatgcaaggttcggggttcga 13196757  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 22523078 - 22523004
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||||| |||| ||| |||| | ||||||||||||||| ||||||||  |||| |||| ||||||||    
T  22523078 tcctcgtgagcttagctcagttggtatggacaatacataatatatgcaaggttcgaggttcaaatcccggccacc 22523004  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 34977199 - 34977281
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||||| |||||||||||| ||| |||| | ||| ||||||||||| ||||| |||||||  || | |||||||| |||||||    
T  34977199 tcctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtccggagtttaaaccccggccaccataaaaaa 34977281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 41543033 - 41542967
Alignment:
Q  136 tcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||||| |||| | ||| ||||||||||||||||||||| |||  || |||||||||| |||||||    
T  41543033 tcaattggtatggacaatgcataatatatgtaaggttcggggtttaaacctcggccaccataaaaaa 41542967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 5168638 - 5168585
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||||||| |||||| | ||||| ||||||||||| ||||||||| ||||    
T  5168638 gagcttaactcagttgatagggataatgcataatatatgcaaggttcggggttc 5168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 7537104 - 7537165
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||| ||| |||||||| |||||| ||| ||| ||||||||||| ||||| ||||||||    
T  7537104 atcctcgtgagattaactcagttgataggaacaatgcataatatatgcaaggtccggagttc 7537165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 7539037 - 7539086
Alignment:
Q  132 taactcaattgatatgaataatacataatatatgtaaggttcggagttcg 181  Q
    |||||||||||||||| |||||  |||||||||| |||||||||| ||||    
T  7539037 taactcaattgatatggataatgtataatatatgcaaggttcggaattcg 7539086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 7772519 - 7772466
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||||||||||| || | ||||| ||||||||||| ||||| ||||||||    
T  7772519 gagcttaactcaattggtaaggataatgcataatatatgcaaggtccggagttc 7772466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 8775265 - 8775314
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    |||||| |||||||  ||| |||||| |||||||||||||||||||||||    
T  8775265 tcctcgtgagcttaggtcagttgataggaataatacataatatatgtaag 8775314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 20239345 - 20239389
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||    
T  20239345 gagcttaactcaattgatagggataatgcataatatatgcaaggt 20239389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 38622941 - 38622977
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatata 163  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  38622941 gagcttaactcaattaatatgaataatgcataatata 38622977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 41853370 - 41853434
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||  |||||| || ||| ||||||||||||||||| ||| ||||||| | ||||||||    
T  41853370 cttaactcagctgatataaacaatgcataatatatgtaaggtccggcgttcgaaccccggccacc 41853434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 3456877 - 3456832
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  3456877 cttaactcaattgatatgaacaatgcataatatatgtaaggttcgg 3456832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 40316851 - 40316907
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcgga 176  Q
    |||||| ||||||| |||| |||||||||||||| |||||||||||||| |||||||    
T  40316851 tcctcgtgagcttatctcagttgatatgaataatgcataatatatgtaaagttcgga 40316907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 7380039 - 7380113
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||||| |||||||| |||| | ||||||||||||||  |||||| || ||||||||| ||||||||    
T  7380039 tcctcgtgagcttagctcaattgttatggacaatacataatatatacaaggttgggggttcgaatcccggccacc 7380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 8717542 - 8717452
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaataaatat 209  Q
    ||||||| ||| ||| |||| ||| |||| | ||| ||||||||||| ||||||||| |||| || |||||||||| ||||||| ||||||    
T  8717542 atcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaaggttcggggttcaaacctcggccaccataaaaaagaaatat 8717452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 35682758 - 35682684
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||||| |||| ||| || | | ||| |||||||||||||||||||||  |||||||||||||||||    
T  35682758 tcctcgtgagcttagctcagttggtacggacaatccataatatatgtaaggttcgggtttcgaatctcggccacc 35682684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 574386 - 574461
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||||| |||| |||||||  | ||| ||||||||||||||||| |||||||||||  ||| ||||| |||||||    
T  574386 gagcttagctcagttgatatagacaatgcataatatatgtaaggtccggagttcgaacttcgaccaccataaaaaa 574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 18959143 - 18959198
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcg 174  Q
    |||||| ||||||||||||||||| || | ||||| ||||||||||| ||||||||    
T  18959143 atcctctcgagcttaactcaattgttagggataatgcataatatatgcaaggttcg 18959198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 26695361 - 26695302
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcgg 189  Q
    |||| |||||||| || | ||||||||||||||||| |||||||| ||||| ||||||||    
T  26695361 cttagctcaattgttaaggataatacataatatatgcaaggttcgaagttctaatctcgg 26695302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 40795379 - 40795446
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| ||| |||||| ||||||||||||||| ||||| ||| |||| |||  ||||||||    
T  40795379 gagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttctaattccggccacc 40795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 6447184 - 6447258
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||| |||||||| ||| |||| | ||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  6447184 tcctcgtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccggagttcaaatctcagccacc 6447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 39975482 - 39975536
Alignment:
Q  117 aaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||  |||||| |||||||| || ||| |||||||||||||||||||||    
T  39975482 aaatcctcgtaagcttagctcaattggtaagaacaatacataatatatgtaaggt 39975536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 41603065 - 41603107
Alignment:
Q  129 gcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  41603065 gcttaactcaattggtatgaacaatgcataatatatgtaaggt 41603107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 10732841 - 10732788
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttc 173  Q
    |||||| |||||||||||||||| |||||| ||| ||||||||||  |||||||    
T  10732841 tcctcgtgagcttaactcaattggtatgaacaatgcataatatatacaaggttc 10732788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 12133593 - 12133548
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    ||||||| |||||||||||| ||| ||| |||||||||||||||||    
T  12133593 cttaactgaattgatatgaacaatgcattatatatgtaaggttcgg 12133548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 38489257 - 38489200
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcg 188  Q
    |||||||| |||||| ||| ||| ||| ||||||| ||||||||| ||||||||||||    
T  38489257 ttaactcagttgataagaacaatgcatgatatatgcaaggttcggggttcgaatctcg 38489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 45049577 - 45049630
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| ||||||||| |||| ||||| ||||| ||||||||||||||| ||||    
T  45049577 gagcttgactcaattggtatggataatgcataaaatatgtaaggttcggggttc 45049630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 1230727 - 1230675
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||||||||| |||||||| ||| || ||| ||| ||||||||||||||||||    
T  1230727 tcctcgcgagtttaactcagttggtaggaacaatgcataatatatgtaaggtt 1230675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 11670777 - 11670809
Alignment:
Q  151 aatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||||||||||||||||| |||||||||||    
T  11670777 aatacataatatatgtaaggtccggagttcgaa 11670809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 17062410 - 17062354
Alignment:
Q  115 aaaaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| |||||| |||||||||||| |||||||  | ||||||||||||||| |||||    
T  17062410 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgcaaggt 17062354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 17585948 - 17586004
Alignment:
Q  115 aaaaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| |||||| |||||||||||| |||||||  | ||||||||||||||| |||||    
T  17585948 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgcaaggt 17586004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 24687782 - 24687844
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggcca 192  Q
    |||||| |||||||||||| || ||| |||||||||||||||| ||||| ||||||| |||||||    
T  24687782 agcttagctcaattgatataaacaatgcataatatatgtaagg-tcgga-ttcgaatttcggcca 24687844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 27718960 - 27718900
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| ||||||| |||| |||||||| | ||| ||||||||||| ||||| ||||||||    
T  27718960 tcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaggtccggagttc 27718900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 28580941 - 28581013
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||| ||||||  |||| ||| |||||||||| ||||| ||||||||||||||| |||| |||| || |||||    
T  28580941 ctcgtgagcttggctcagttggtatgaataatgcataaaatatgtaaggttcggggttcaaatcccgaccacc 28581013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 29293172 - 29293232
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| |||||||||||| || ||||  | |||| |||||||||||||||| ||||||||    
T  29293172 tcctcgtgagcttaactcagttaatatagacaatatataatatatgtaaggtccggagttc 29293232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 41625196 - 41625240
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||| |||| ||| |||||||||| |||||||||||||||||    
T  41625196 gagcttagctcagttggtatgaataatgcataatatatgtaaggt 41625240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 429242 - 429181
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||| |||||||||||| |||||||| ||||||||||||||||| |||||| ||||| ||||    
T  429242 ctcgtgagcttaactcagttgatatggataatacataatatatgcaaggtttggagtccgaa 429181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 27270240 - 27270312
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||||||| ||| |||| | ||| ||||||||||| ||||||||||||||||| ||| |||||| |||||||    
T  27270240 cttaactcagttggtatggacaatgcataatatatgcaaggttcggagttcgaacctcagccaccataaaaaa 27270312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 9893139 - 9893072
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||| ||||||||||||| | ||||||||| ||||| |||||||| ||||| |||| ||||||||    
T  9893139 gagcttatctcaattgatatggacaatacataaaatatgcaaggttcgaagttcaaatcccggccacc 9893072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 32496881 - 32496932
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||||||||||||||||   ||||| |||||||||||||||||||||    
T  32496881 tcctcgcgagcttaactcaattagcatgaacaatacataatatatgtaaggt 32496932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 34000264 - 34000331
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||| |||||| | ||||| ||||||||||||||||||||| |||| |||  ||||||||    
T  34000264 gagcttaactcagttgataaggataatgcataatatatgtaaggttcggggttcaaataccggccacc 34000331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 47960898 - 47960953
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcga 182  Q
    ||||||||||||||||||| | | |||||||||||||||  |||||||||||||||    
T  47960898 gagcttaactcaattgataaggacaatacataatatatgcgaggttcggagttcga 47960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 32855525 - 32855575
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||||| |||||||||||||| ||||||||||| || |||||||||||    
T  32855525 cttaactcagttgatatgaataatgcataatatatgcaaagttcggagttc 32855575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 39706615 - 39706689
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||| |||||||||||| ||| || ||||||||||||||| |||||| || ||| || |||||||||||    
T  39706615 tcctcgtgagattaactcaattggtataaacaatacataatatatgcaaggtttggggtttgagtctcggccacc 39706689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 44639647 - 44639689
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggttc 173  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  44639647 ttaactcaattggtatgaacaatacataatatatgtaaggttc 44639689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 41132446 - 41132499
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||| |||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  41132446 gagcttagctcaattgatttgaacaatacataaaatatgcaaggttcggagttc 41132499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 16198408 - 16198452
Alignment:
Q  150 taatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||    
T  16198408 taatgcataatatatgcaaggtccggagttcgaatctcggccacc 16198452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 27263346 - 27263418
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||||||| ||| |||| | ||| ||||||||||| ||||||||||||||||| | | |||||| |||||||    
T  27263346 cttaactcagttggtatggacaatgcataatatatgcaaggttcggagttcgaaccccagccaccataaaaaa 27263418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 35751429 - 35751389
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaa 168  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  35751429 agcttagctcaattgatatgaataatgcataatatatgtaa 35751389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 21580819 - 21580862
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||||||||||| | ||| |||||||||||||||||    
T  21580819 agcttaactcaattgatatggacaatgcataatatatgtaaggt 21580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 48527192 - 48527259
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||| |||| |||||| | | ||| ||||||||||| ||||| ||||||||||||| ||||||||    
T  48527192 gagcttatctcagttgataaggacaatgcataatatatgcaaggtccggagttcgaatcccggccacc 48527259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 4905271 - 4905353
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||||| |||||||||||| ||| | || | ||| ||||| ||||| |||||||||||||| || | |||||||| |||||||    
T  4905271 tcctcgtgagcttaactcagttgttgtggacaatgcataaaatatgcaaggttcggagttcaaaccccggccaccataaaaaa 4905353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 2622319 - 2622400
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaa 200  Q
    ||||||| ||||||| || | |||||| ||| ||||||||||||||||||| ||  |||||| || | |||||||| |||||    
T  2622319 atcctcgtgagcttagcttagttgataggaacaatacataatatatgtaagatttagagttcaaaccccggccaccataaaa 2622400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 2962763 - 2962710
Alignment:
Q  149 ataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    ||||| ||||||||||| ||||||||| ||| ||||| |||||||| |||||||    
T  2962763 ataatgcataatatatgcaaggttcggggtttgaatcccggccaccataaaaaa 2962710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 23205408 - 23205367
Alignment:
Q  140 ttgatatgaataatacataatatatgtaaggttcggagttcg 181  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  23205408 ttgatatgaataatacataataaatgcaaggttcggggttcg 23205367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 12167402 - 12167446
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatat 164  Q
    ||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  12167402 tcctcgcgaacttaattcaattgatatgaacaatgcataatatat 12167446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 15015243 - 15015287
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||| |||||| ||| ||| |||||||||||||||||    
T  15015243 gagcttaactcagttgataagaacaatgcataatatatgtaaggt 15015287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 24099286 - 24099246
Alignment:
Q  135 ctcaattgatatgaataatacataatatatgtaaggttcgg 175  Q
    |||||||||||| || ||| |||||||||||||||||||||    
T  24099286 ctcaattgatataaacaatgcataatatatgtaaggttcgg 24099246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 29726795 - 29726855
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| |||||||||||| |||| ||||| |||  |||||||||| ||||||||| ||||    
T  29726795 tcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggttcggggttc 29726855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 48837872 - 48837936
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||||||||| |||| ||||| ||||||||||| || ||| || ||||||| | ||||||||    
T  48837872 cttaactcaattggtatggataatgcataatatatgcaaagtttggggttcgaaccccggccacc 48837936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 9311996 - 9311947
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaag 169  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||||    
T  9311996 tcctcgtgagcttaactcagttggtatgaataatacataatatatgtaag 9311947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 13496111 - 13496171
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||    
T  13496111 tcctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaaggtccggagttc 13496171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 9665305 - 9665368
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| ||| |||||||||||| |||||| |||| |||||||||||||||| ||| |||||||    
T  9665305 tcctcgtgagtttaactcaattggtatgaacaatatataatatatgtaaggtccggggttcgaa 9665368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 28951393 - 28951468
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||||| |||||||||||| ||| |||||| ||| ||||||||||| ||||||| |||||  || ||||||||||    
T  28951393 atcctcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggttcagagtttaaacctcggccacc 28951468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 8916540 - 8916466
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||| ||||| |||||| ||| || | | ||||||||||||||| ||||| |||||||| |||||||||||||    
T  8916540 tcctcgtgagctaaactcagttggtagggacaatacataatatatgcaaggtccggagttcaaatctcggccacc 8916466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 12904376 - 12904323
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||| |||| |||||||||| ||| ||||||||||| ||||||||||||||    
T  12904376 gagcttacctcagttgatatgaacaatgcataatatatgcaaggttcggagttc 12904323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 2213289 - 2213365
Alignment:
Q  117 aaatcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccac 193  Q
    ||||||||| || ||||||||||||| || ||| ||| ||||||||||| ||||| || |||| ||||| |||||||    
T  2213289 aaatcctcgtgaacttaactcaattggtaagaacaatgcataatatatgcaaggtccgaagttagaatcccggccac 2213365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 8629755 - 8629688
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||||||||| |||| | ||| ||||||||||| ||||||||| |||| || |||| |||||    
T  8629755 gagcttaactcaattggtatggacaatgcataatatatgcaaggttcggggttcaaacctcgaccacc 8629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 10902335 - 10902398
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||||| ||||  ||||||| | ||| |||||||||||||| ||| ||||||||||    
T  10902335 tcctcgcgagcttagctcagatgatatggacaatgcataatatatgtaaagtttggagttcgaa 10902398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 11148207 - 11148270
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| |||||||||||| || |  || |||||||||||||||| |||||||||| |||||||    
T  11148207 tcctcgtgagcttaactcagttaacttggataatacataatatatttaaggttcggggttcgaa 11148270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 12336392 - 12336319
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccac 193  Q
    |||||| ||| |||||||| || ||||| | ||| |||||||||| |||||| ||| |||||||||||| ||||    
T  12336392 tcctcgtgagtttaactcagttaatatggacaatgcataatatatataaggtacggggttcgaatctcgaccac 12336319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 23635773 - 23635720
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||| |||| |||||||  | ||| ||||||||||||||||||||||||||    
T  23635773 gagcttatctcagttgatatatacaatgcataatatatgtaaggttcggagttc 23635720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 24438349 - 24438288
Alignment:
Q  119 atcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    ||||||| || ||||||||| ||| || ||||||| |||||||||||||| |||||| ||||    
T  24438349 atcctcgtgaacttaactcagttggtaagaataatgcataatatatgtaaagttcggggttc 24438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 6283946 - 6283994
Alignment:
Q  135 ctcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    ||||||||||| ||| ||| |||||||||||||| | ||||||||||||    
T  6283946 ctcaattgataagaacaatgcataatatatgtaaagctcggagttcgaa 6283994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 9977059 - 9977103
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  9977059 gagcttaactcaattggtatggataatgcataatatatgcaaggt 9977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 12459783 - 12459747
Alignment:
Q  144 tatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  12459783 tatgaataatgcataatatatgtaaggttcggggttc 12459747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 21331483 - 21331412
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggcc 191  Q
    |||||| ||||||| |||| ||| |||| | ||| ||||||||||| ||||||||| |||||||||||||||    
T  21331483 tcctcgtgagcttagctcagttgttatggacaatgcataatatatgcaaggttcggggttcgaatctcggcc 21331412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 17755122 - 17755176
Alignment:
Q  126 cgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||| |||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  17755122 cgagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttc 17755176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 19056442 - 19056496
Alignment:
Q  126 cgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttc 180  Q
    |||||||| |||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  19056442 cgagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttc 19056496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 10843845 - 10843796
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||| |||||||||||| ||| |||||||||||||||||||||| |||||    
T  10843845 ctcgtgagcttaactcagttggtatgaataatacataatatatgcaaggt 10843796  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 53633683 - 53633619
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaat 184  Q
    |||||| |||||||||||| ||| || | ||||| ||||||||||||||||| ||| ||||||||    
T  53633683 tcctcgtgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttcgaat 53633619  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 7827503 - 7827566
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||| ||| |||||||| |||||||| | ||| |||||||||||||||||  ||||||||||    
T  7827503 tcctcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctggagttcgaa 7827566  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 46337294 - 46337231
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    |||| |||||||||||||| | |||||| ||||||||| ||||||||||| || |||| |||||    
T  46337294 ctcgtgagcttaactcaatcggtatgaacaatacataaaatatgtaaggtccgcagtttgaatc 46337231  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 47099094 - 47099036
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    ||||||| |||| |||||| ||||||| ||||||||||| ||||||||| |||| ||||    
T  47099094 gagcttagctcagttgataagaataatgcataatatatgcaaggttcggggttcaaatc 47099036  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 48376830 - 48376912
Alignment:
Q  120 tcctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccaccgtaaaaaa 202  Q
    |||||| ||||||| |||| ||| ||   ||||| |||||||||||||||||| || ||||||||| ||||| || |||||||    
T  48376830 tcctcgtgagcttagctcagttggtaaagataatgcataatatatgtaaggtttggggttcgaatcccggccgccataaaaaa 48376912  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 21160057 - 21160098
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  21160057 cttaactcagttgatatggataatgcataatatatgtaaggt 21160098  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 43630473 - 43630432
Alignment:
Q  131 ttaactcaattgatatgaataatacataatatatgtaaggtt 172  Q
    |||||||||||| |||||| ||| ||||||||||||||||||    
T  43630473 ttaactcaattggtatgaacaatgcataatatatgtaaggtt 43630432  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 45254261 - 45254294
Alignment:
Q  155 cataatatatgtaaggttcggagttcgaatctcg 188  Q
    |||||||||||||||||| |||||||||||||||    
T  45254261 cataatatatgtaaggtttggagttcgaatctcg 45254294  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 1744046 - 1743982
Alignment:
Q  130 cttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    ||||| ||| ||| |||| | ||||||||||||||| ||||||||| |||||||  |||||||||    
T  1744046 cttaattcagttggtatggacaatacataatatatgcaaggttcggggttcgaacttcggccacc 1743982  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 5941353 - 5941297
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaa 183  Q
    |||||||||||| ||| |||||| ||| ||||||||||| | |||||||| ||||||    
T  5941353 gagcttaactcagttggtatgaacaatgcataatatatgcatggttcggaattcgaa 5941297  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 42784959 - 42785003
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||    
T  42784959 gagcttaactcagttgatatggacaatacataatatgtgtaaggt 42785003  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 42990 - 42933
Alignment:
Q  128 agcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatc 185  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||  ||||||||    
T  42990 agcttaactcagttgataagaataatgcataatatatgcaaggttcgggattcgaatc 42933  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 4472 - 4539
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||||||||| | |||||| ||||||| |||||||||||||||||   ||||||||||| ||| ||||    
T  4472 gagcttaactaagttgataggaataatgcataatatatgtaaggtctagagttcgaatcccggacacc 4539  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 8003 - 7971
Alignment:
Q  147 gaataatacataatatatgtaaggttcggagtt 179  Q
    ||||||| |||||||||||||||||||||||||    
T  8003 gaataatgcataatatatgtaaggttcggagtt 7971  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 7471 - 7542
Alignment:
Q  122 ctcgcgagcttaactcaattgatatgaataatacataatatatgtaaggttcggagttcgaatctcggccacc 194  Q
    |||| |||||||||||||||| |||||| ||| ||||| |||||||| | || | ||||||||| ||||||||    
T  7471 ctcgtgagcttaactcaattggtatgaacaatgcataaaatatgtaa-gatctgggttcgaatcccggccacc 7542  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 122893 - 122937
Alignment:
Q  127 gagcttaactcaattgatatgaataatacataatatatgtaaggt 171  Q
    |||||||||||||||| |||||| ||| ||||||||||| |||||    
T  122893 gagcttaactcaattggtatgaacaatgcataatatatgcaaggt 122937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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