View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_low_11 (Length: 307)

Name: NF1411_low_11
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_low_11
NF1411_low_11
[»] chr8 (5 HSPs)
chr8 (1-121)||(28997829-28997949)
chr8 (1-121)||(1420277-1420397)
chr8 (240-305)||(28997645-28997710)
chr8 (1-64)||(28996937-28997000)
chr8 (240-305)||(1420130-1420191)
[»] chr1 (2 HSPs)
chr1 (1-114)||(47038969-47039083)
chr1 (29-77)||(39162956-39163004)
[»] scaffold0765 (1 HSPs)
scaffold0765 (1-64)||(1963-2026)
[»] scaffold0001 (1 HSPs)
scaffold0001 (29-114)||(120827-120913)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-58)||(374438-374495)
[»] scaffold0230 (1 HSPs)
scaffold0230 (29-114)||(275-361)
[»] chr6 (2 HSPs)
chr6 (1-114)||(17000119-17000233)
chr6 (29-114)||(18810661-18810747)
[»] chr4 (2 HSPs)
chr4 (16-58)||(17281688-17281730)
chr4 (16-58)||(17370190-17370232)
[»] chr2 (2 HSPs)
chr2 (1-114)||(25977973-25978087)
chr2 (1-58)||(24748315-24748371)
[»] chr5 (1 HSPs)
chr5 (1-37)||(15603979-15604015)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28997949 - 28997829
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagactggtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  28997949 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatgacggtacaatcttgtacatgtggcgcagactggtat 28997850  T
Q  101 ttaacttattttaacatttta 121  Q
    |||||||||||||||||||||    
T  28997849 ttaacttattttaacatttta 28997829  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1420397 - 1420277
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagactggtat 100  Q
    |||||||||| |||||||||||||  |||||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||    
T  1420397 aaaatagtccatggacccactttattgatgatttggctagtttttacttaggtggcagatgatgacggtacaatcttgtacatgtggcgcagactggcat 1420298  T
Q  101 ttaacttattttaacatttta 121  Q
    ||||| |||||||||||||||    
T  1420297 ttaacatattttaacatttta 1420277  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 28997710 - 28997645
Alignment:
Q  240 acttgtatccaccacacctacctttagcctttattctgcaatccaaacctaagttctgtttatttt 305  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  28997710 acttgtatccaccacacctacctttagcctttattcttcaatccaaacctaatttctgtttatttt 28997645  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28996937 - 28997000
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatg 64  Q
    |||||||||| |||||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  28996937 aaaatagtccttggacccactttattgatgatttggctgatttttgctcaggtggcagatgatg 28997000  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 1420191 - 1420130
Alignment:
Q  240 acttgtatccaccacacctacctttagcctttattctgcaatccaaacctaagttctgtttatttt 305  Q
    ||||||||||||||||| |    |||||||| ||||| ||||||||||| || |||||||||||||    
T  1420191 acttgtatccaccacactt----ttagccttcattcttcaatccaaacccaatttctgtttatttt 1420130  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 47038969 - 47039083
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcaga-ctggta 99  Q
    |||||||||| ||||||||||||   | ||||||||||| ||||||||||||||||||||| ||   |||||||||| ||||||||||||| |  ||| |    
T  47038969 aaaatagtccttggacccactttctagttgatttggctgatttttgcttaggtggcagatgttgactgtacaatcttatacatgtggcgcacatgtggca 47039068  T
Q  100 tttaacttattttaa 114  Q
    |||||||||||||||    
T  47039069 tttaacttattttaa 47039083  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 39162956 - 39163004
Alignment:
Q  29 tgatttggctggtttttgcttaggtggcagatgatggtggtacaatctt 77  Q
    |||||||||| ||||||||||||||| ||||||||| | |||| |||||    
T  39162956 tgatttggctagtttttgcttaggtgacagatgatgattgtaccatctt 39163004  T

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Target: scaffold0765 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1963 - 2026
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatg 64  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  1963 aaaatagtccttggacccactttactgatgatttggctgatttttacttaggtgggagatgatg 2026  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 120913 - 120827
Alignment:
Q  29 tgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcaga-ctggtatttaacttattttaa 114  Q
    ||||||||||| ||||||||||||||||||||| ||   |||||||||| ||||||||||||| |  ||| ||||||||||||||||    
T  120913 tgatttggctgatttttgcttaggtggcagatgttgactgtacaatcttatacatgtggcgcacatatggcatttaacttattttaa 120827  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 374438 - 374495
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcag 58  Q
    |||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||    
T  374438 aaaatagtccttggtcccactttactgatgatttggctagtttttgcttaggtggcag 374495  T

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Target: scaffold0230 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 361 - 275
Alignment:
Q  29 tgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagac-tggtatttaacttattttaa 114  Q
    ||||||||||| |||||||||| ||| | |||| ||  ||||||||||| ||||||||| ||| || ||  ||||||||||||||||    
T  361 tgatttggctgatttttgcttaagtgactgatgttgacggtacaatcttatacatgtggtgcacacgtgtcatttaacttattttaa 275  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17000233 - 17000119
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagac-tggta 99  Q
    |||| ||||||||||||||||||   | |||||||||   ||||||||||||||| || |||||   |||| | |||| |||||||||||| || ||| |    
T  17000233 aaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtggtagctgatgactgtaccaacttgaacatgtggcgcacacatggaa 17000134  T
Q  100 tttaacttattttaa 114  Q
    ||||| |||||||||    
T  17000133 tttaatttattttaa 17000119  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 18810661 - 18810747
Alignment:
Q  29 tgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagac-tggtatttaacttattttaa 114  Q
    ||||||||||| |||||||||| ||| | |||| ||  ||||||||||| ||||||||| ||| || ||  ||||||||||||||||    
T  18810661 tgatttggctgatttttgcttaagtgactgatgttgacggtacaatcttatacatgtggtgcacacgtgtcatttaacttattttaa 18810747  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 17281688 - 17281730
Alignment:
Q  16 cccactttaccgatgatttggctggtttttgcttaggtggcag 58  Q
    |||||||||| ||||||||||||| |||||||||| |||||||    
T  17281688 cccactttactgatgatttggctgatttttgcttacgtggcag 17281730  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 17370190 - 17370232
Alignment:
Q  16 cccactttaccgatgatttggctggtttttgcttaggtggcag 58  Q
    |||||||||| ||||||||||||| |||||||||| |||||||    
T  17370190 cccactttactgatgatttggctgatttttgcttacgtggcag 17370232  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25977973 - 25978087
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcagatgatggtggtacaatcttgtacatgtggcgcagac-tggta 99  Q
    |||| ||||||||||||||||||   | |||||||||   ||||||||||||||| || |||||   |||| | |||| |||||||||||| || ||| |    
T  25977973 aaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtggtagctgatgactgtaccaacttgaacatgtggcgcacacatggaa 25978072  T
Q  100 tttaacttattttaa 114  Q
    ||||| |||||||||    
T  25978073 tttaatttattttaa 25978087  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24748315 - 24748371
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggctggtttttgcttaggtggcag 58  Q
    |||||||||| ||| |||||||||| ||||||||||||| ||||| |||| |||||||    
T  24748315 aaaatagtccttggccccactttactgatgatttggctgattttt-cttacgtggcag 24748371  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15604015 - 15603979
Alignment:
Q  1 aaaatagtccctggacccactttaccgatgatttggc 37  Q
    |||||||||| |||||||||||||| |||||||||||    
T  15604015 aaaatagtccttggacccactttactgatgatttggc 15603979  T

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