View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_13 (Length: 291)
Name: NF1411_low_13
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 33992299 - 33992557
Alignment:
| Q |
8 |
cgaagaatataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcagtccagtttatttttacatgtatattaatcaagg |
107 |
Q |
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| T |
33992299 |
cgaaaaatataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcagtccagtttttttttacatgtatattaatcaagg |
33992398 |
T |
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| Q |
108 |
tttaaatgaggtctcctattttcaatagtttaattatttatatttatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaa |
207 |
Q |
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| T |
33992399 |
tttaaatgaggtctcctattttcaatagtttaat------tatttatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaa |
33992492 |
T |
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| Q |
208 |
acaacttgcagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaacctttt |
272 |
Q |
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| T |
33992493 |
acaacttgcagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaacctttt |
33992557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 33982754 - 33982800
Alignment:
| Q |
227 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttg |
273 |
Q |
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| T |
33982754 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttg |
33982800 |
T |
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