View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_16 (Length: 247)
Name: NF1411_low_16
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 15379533 - 15379294
Alignment:
| Q |
1 |
tttagataagatgatttatgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggg |
100 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379533 |
tttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggg |
15379434 |
T |
|
| Q |
101 |
gttactgatcttagcctccaatccaagacacttagaacaagtagctccattcttctaattgttatgggttcaaacatgtatttgacaccttctacctata |
200 |
Q |
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| T |
15379433 |
gtaactgatcttagcctccaatccaagacacttagaacaagtagctccattcttctaattgttatgggttcaaacatgtatttgacaccttctacctata |
15379334 |
T |
|
| Q |
201 |
ttaaattataagaaatttataaagtaatgtcaagtataat |
240 |
Q |
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| T |
15379333 |
ttaaattattagaaatttataaagtaatgtcaagtataat |
15379294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 26436366 - 26436517
Alignment:
| Q |
2 |
ttagataagatgatttatgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatgggg |
101 |
Q |
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|||||||||||||||| |||||| |||||||| | || || |||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
26436366 |
ttagataagatgatttctgtagcacgtgaaattatgaagtgggtgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaaactaagtgggg |
26436465 |
T |
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| Q |
102 |
ttactgatcttagcctccaatccaagacacttagaacaagtagctccattct |
153 |
Q |
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| | |||||| |||||||||||||| | | | |||||||| ||||||||||| |
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| T |
26436466 |
tgattgatctcagcctccaatccaaaatagtcagaacaagcagctccattct |
26436517 |
T |
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