View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_18 (Length: 245)
Name: NF1411_low_18
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_18 |
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| [»] scaffold0955 (1 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 25445645 - 25445874
Alignment:
| Q |
3 |
ttaactttagaaactaacc-aatattttaaactccgttgattctc----ctctttgctttaatttctacatattttaatgagcaaagaagttgcatagat |
97 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25445645 |
ttaactttagaaaataacccaatattttaaactccgttgattctcaattctctttgctttaatttctacatattttaatgagcaaagaagttgcatagat |
25445744 |
T |
|
| Q |
98 |
caaccatcgatctatataaaaagggaagttctcaagtgtataaggtacaagagaggagaaacttccatatatccaaacaagtcataatctagctatagca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25445745 |
caaccatcgatctatataaaaagggaagttctcaagtgtataaggtacaagagaggagaaacttccatatatccaaacaagtcataatctagctatagca |
25445844 |
T |
|
| Q |
198 |
attgtaaatggcaaaatcctcctcctcctc |
227 |
Q |
| |
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|||||| ||||||||||| ||||||||||| |
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| T |
25445845 |
attgtatatggcaaaatcatcctcctcctc |
25445874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 25388068 - 25388206
Alignment:
| Q |
3 |
ttaactttagaaactaacc-aatattttaaactccgttgattctc------ctctttgctttaatttctacatattttaatgagcaaagaagttgcatag |
95 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25388068 |
ttaactttagaaactaacccaatattttaaactccgttgattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcatag |
25388167 |
T |
|
| Q |
96 |
atcaaccatcgatctatataaaaagggaagttctcaagt |
134 |
Q |
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||| ||| ||||||||||||||||||||||||||||||| |
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| T |
25388168 |
atcgaccgtcgatctatataaaaagggaagttctcaagt |
25388206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 25645250 - 25645381
Alignment:
| Q |
9 |
ttagaaactaacc-aatattttaaactccgttgattctc------ctctttgctttaatttctacatattttaatgagcaaagaagttgcatagatcaac |
101 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||| |||| | |||||||||||||||| |||||| ||||||||| |||||||||| | |
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| T |
25645250 |
ttagaaactaacccaatattttaaactcctttgatcctcaattcactctat-ctttaatttctacatactttaataggcaaagaagctgcatagatcgag |
25645348 |
T |
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| Q |
102 |
catcgatctatataaaaagggaagttctcaagt |
134 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
25645349 |
catcgatctatataaaaagggaatttctcaagt |
25645381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 25383440 - 25383520
Alignment:
| Q |
54 |
ctttaatttctacatattttaatgagcaaagaagttgcatagatcaaccatcgatctatataaaaagggaagttctcaagt |
134 |
Q |
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|
|||||||||||||||| |||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
25383440 |
ctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatcgatctatataaaaagggaagttgtcaagt |
25383520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 25798489 - 25798562
Alignment:
| Q |
6 |
actttagaaactaacc-aatattttaaactccgttgattctc----ctc---tttgctttaatttctacatatt |
71 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |
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| T |
25798489 |
actttagaaactaacccaatattttaaactccattgattctcaattctctcttttgctttaatttctacatatt |
25798562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 2700 - 2925
Alignment:
| Q |
3 |
ttaactttagaaactaacc-aatattttaaactccgttgattctc------ctctttgctttaatttctacatattttaatgagcaaagaagttgcatag |
95 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700 |
ttaacattagaaactaacccaatattttaaactcccttgattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcatag |
2799 |
T |
|
| Q |
96 |
atcaaccatcgatctatataaaaagggaagttctcaagtgtataaggtacaagagaggagaaacttccatatatccaaacaag--tcataatctagctat |
193 |
Q |
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||| |||||| |||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
2800 |
atcgaccatctatctatat-aaaagggaagttctcaagtatataaggt-------aggataaacttccatatatccaaacaagtttcataatctagctat |
2891 |
T |
|
| Q |
194 |
agcaattgtaaatggcaaaatcctcctcctcctc |
227 |
Q |
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|||||| |||||||| |||||||||||||||||| |
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| T |
2892 |
agcaatagtaaatggaaaaatcctcctcctcctc |
2925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 20168 - 19990
Alignment:
| Q |
6 |
actttagaaactaacc-aatattttaaactccgttgattctc------ctctttgctttaatttctacatattttaatgagcaaagaagttgcatagatc |
98 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168 |
actttagaaactaacccaatattttaaactccattgattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcata---- |
20073 |
T |
|
| Q |
99 |
aaccatcgatctatataaaaagggaagttctcaagtgtataaggtacaagagaggagaaacttccatatatccaaacaag--tcataatctagcta |
192 |
Q |
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|||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||| |
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| T |
20072 |
-------------tataaaaatggaagtgctcaagtatataaggtacaagaaaggagaaactttcatatatccaagcaagtctcataatctagcta |
19990 |
T |
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