View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_20 (Length: 236)
Name: NF1411_low_20
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 21122862 - 21122627
Alignment:
| Q |
1 |
tctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtc |
100 |
Q |
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| T |
21122862 |
tctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtataagcgaatccctgtatccttcaaatgaaactctctccatagattgtc |
21122763 |
T |
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| Q |
101 |
aactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaacatatct |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21122762 |
aactattataagagttctcttcatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttcaagtttaacatatct |
21122663 |
T |
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| Q |
201 |
gcaatttgtccttgaatgctcctaatgtttggagtt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
21122662 |
gcaatttgtccttgaatgctcctaatgtttggagtt |
21122627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 21115363 - 21115200
Alignment:
| Q |
73 |
tcaaatgaaactctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttc |
172 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||| ||| ||| ||| |||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
21115363 |
tcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttc |
21115264 |
T |
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| Q |
173 |
ttcccccaatttaaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagtt |
236 |
Q |
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| T |
21115263 |
ttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtt |
21115200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 21715534 - 21715745
Alignment:
| Q |
7 |
tacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactat |
106 |
Q |
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| T |
21715534 |
tacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaattat |
21715633 |
T |
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| Q |
107 |
tataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaacatatctgcaatt |
206 |
Q |
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| T |
21715634 |
aacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttccttgagtttcaagtttaacatgtctgccatt |
21715733 |
T |
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| Q |
207 |
tgtccttgaatg |
218 |
Q |
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| T |
21715734 |
tttccttgaatg |
21715745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 23010436 - 23010646
Alignment:
| Q |
7 |
tacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactat |
106 |
Q |
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|||| |||||| ||||||| ||| ||||||| | |||||||||| ||||||||||||| ||| ||||||| |||||||||||||| || || ||||| |
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| T |
23010436 |
tacgagtggttgcaaggatcttccatgcacccttgttatcattgtctaagcgaatccctacatcgttcaaatcaaactctctccataaatcatctactat |
23010535 |
T |
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| Q |
107 |
tataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaacatatctgcaatt |
206 |
Q |
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| T |
23010536 |
tacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccctcatcactttcttcctccaatttcatgttcaaaacatcagctatt |
23010635 |
T |
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| Q |
207 |
tgtccttgaat |
217 |
Q |
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| T |
23010636 |
tttccttgaat |
23010646 |
T |
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