View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_25 (Length: 201)
Name: NF1411_low_25
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 14122191 - 14122101
Alignment:
| Q |
97 |
ggtaacaatgcagtctaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttg |
187 |
Q |
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| T |
14122191 |
ggtaacaatgcagtccaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttg |
14122101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 14123250 - 14123209
Alignment:
| Q |
58 |
acttaatgcgtccttttatttagaataaatcaatcaaatggt |
99 |
Q |
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| T |
14123250 |
acttaatgcgcacttttatttagaataaatcgatcaaatggt |
14123209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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