View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_low_3 (Length: 535)

Name: NF1411_low_3
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_low_3
NF1411_low_3
[»] chr4 (1 HSPs)
chr4 (48-517)||(30585566-30586035)
[»] chr1 (2 HSPs)
chr1 (380-423)||(2832080-2832123)
chr1 (383-419)||(21002267-21002303)
[»] scaffold0091 (1 HSPs)
scaffold0091 (385-430)||(6033-6078)
[»] chr8 (3 HSPs)
chr8 (385-430)||(5226616-5226661)
chr8 (383-423)||(3254324-3254364)
chr8 (383-419)||(9130241-9130277)
[»] chr5 (2 HSPs)
chr5 (383-424)||(6938655-6938696)
chr5 (383-423)||(10771810-10771850)
[»] chr3 (3 HSPs)
chr3 (380-418)||(53762313-53762351)
chr3 (378-419)||(20880588-20880629)
chr3 (386-423)||(27795938-27795975)
[»] chr7 (2 HSPs)
chr7 (393-422)||(753078-753107)
chr7 (393-429)||(1418521-1418557)
[»] chr2 (2 HSPs)
chr2 (383-423)||(11514004-11514044)
chr2 (383-423)||(12147552-12147592)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 48 - 517
Target Start/End: Complemental strand, 30586035 - 30585566
Alignment:
Q  48 gagaatttctttgagggctgatgaaacagctacctctgtcaagcagcgatcaaactgcagacatctttcagctttagctttggggattctgcctagtttg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  30586035 gagaatttctttgagggctgatgaaacagctacctctgtcaagcagcgatcaaactgcagacatctttcagctttagctttggggagtctgcctagttta 30585936  T
Q  148 tcgttaagtcagttacatgttgactaggccagttagttagactaaagtgatggctcaacaagggaattagttccatttgtatataagtcaacattgcctc 247  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585935 tcgttaaggcagttacatgttgactaggccagttagttagactaaagtgatggctcaacaagggaattagttccatttgtatataagtcaacattgcctc 30585836  T
Q  248 tgattcctttcattctagatactaagaaacgtttttcctcatgtcttctatttcttctctaatagtgtaaaaagccaaacataatcctaccaacctttac 347  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30585835 tgattcctttcattctagatactaagaaacatttttcctcatgtcttctatttcttctctaaaagtgtaaaaagccaaacataatcctaccaacctttac 30585736  T
Q  348 aaattagtgagaaatatcaaatgcaagggtcatgcttggattagtttatttgagcttatctacttgcataagcactaatgagaatgagactgtatacaag 447  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585735 aaattagcgagaaatatcaaatgcaagggtcatgcttggattagtttatttgagcttatctacttgcataagcactaatgagaatgagactgtatacaag 30585636  T
Q  448 aactaatggaaacaacttatgaagataaataaatagttgagcaaaggattaacaaaatagtaatacagaa 517  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585635 aactcatggaaacaacttatgaagataaataaatagttgagcaaaggattaacaaaatagtaatacagaa 30585566  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 2832123 - 2832080
Alignment:
Q  380 tgcttggattagtttatttgagcttatctacttgcataagcact 423  Q
    |||||||||||| ||||||||||||||||||| |||||||||||    
T  2832123 tgcttggattagcttatttgagcttatctactagcataagcact 2832080  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 21002303 - 21002267
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataag 419  Q
    ||||||| | |||||||||||||||||||||||||||    
T  21002303 ttggattggcttatttgagcttatctacttgcataag 21002267  T

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Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 6078 - 6033
Alignment:
Q  385 ggattagtttatttgagcttatctacttgcataagcactaatgaga 430  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||    
T  6078 ggatttgtttatttgatcttatctacttgcataagcacttatgaga 6033  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 5226661 - 5226616
Alignment:
Q  385 ggattagtttatttgagcttatctacttgcataagcactaatgaga 430  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||    
T  5226661 ggatttgtttatttgatcttatctacttgcataagcacttatgaga 5226616  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 3254364 - 3254324
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataagcact 423  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  3254364 ttggattggtttacttgagcttatctactggcataagcact 3254324  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 419
Target Start/End: Original strand, 9130241 - 9130277
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataag 419  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  9130241 ttggattagcttatttgagcttatctactggcataag 9130277  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 6938655 - 6938696
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataagcacta 424  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  6938655 ttggattaggttatttgagcttatctactagcataagcacta 6938696  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 10771810 - 10771850
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataagcact 423  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  10771810 ttggattggcttatttgagcttatctactggcataagcact 10771850  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 53762313 - 53762351
Alignment:
Q  380 tgcttggattagtttatttgagcttatctacttgcataa 418  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  53762313 tgcttggattggtttatttgagcttatctactagcataa 53762351  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 20880629 - 20880588
Alignment:
Q  378 catgcttggattagtttatttgagcttatctacttgcataag 419  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  20880629 catgtttggattggcttatttgagcttatctacttgcataag 20880588  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 27795938 - 27795975
Alignment:
Q  386 gattagtttatttgagcttatctacttgcataagcact 423  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcact 27795975  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 753107 - 753078
Alignment:
Q  393 ttatttgagcttatctacttgcataagcac 422  Q
    ||||||||||||||||||||||||||||||    
T  753107 ttatttgagcttatctacttgcataagcac 753078  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 1418557 - 1418521
Alignment:
Q  393 ttatttgagcttatctacttgcataagcactaatgag 429  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  1418557 ttatttgagcttatctactggcataagcacttatgag 1418521  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 11514044 - 11514004
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataagcact 423  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  11514044 ttggattggtttatttgagattatctactagcataagcact 11514004  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 12147592 - 12147552
Alignment:
Q  383 ttggattagtttatttgagcttatctacttgcataagcact 423  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  12147592 ttggattagtttatttgagctaatctgctggcataagcact 12147552  T

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