View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411_low_4 (Length: 447)

Name: NF1411_low_4
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411_low_4
NF1411_low_4
[»] chr5 (23 HSPs)
chr5 (1-314)||(33904573-33904886)
chr5 (130-295)||(33763363-33763528)
chr5 (140-294)||(33734534-33734688)
chr5 (152-287)||(33867039-33867174)
chr5 (152-296)||(33749004-33749148)
chr5 (151-281)||(33698707-33698837)
chr5 (152-296)||(33821799-33821943)
chr5 (379-437)||(33904417-33904475)
chr5 (380-437)||(33679837-33679894)
chr5 (380-437)||(33698554-33698611)
chr5 (380-437)||(33865908-33865965)
chr5 (380-433)||(33734329-33734382)
chr5 (381-433)||(33762791-33762843)
chr5 (380-433)||(33821659-33821712)
chr5 (1-40)||(33867303-33867342)
chr5 (380-433)||(33748801-33748854)
chr5 (380-433)||(33834921-33834974)
chr5 (152-272)||(33680120-33680240)
chr5 (1-40)||(33736435-33736474)
chr5 (1-47)||(33750168-33750214)
chr5 (1-39)||(33763706-33763744)
chr5 (1-46)||(33823135-33823180)
chr5 (213-269)||(33846626-33846682)
[»] scaffold0001 (2 HSPs)
scaffold0001 (2-288)||(149000-149287)
scaffold0001 (379-436)||(148803-148860)
[»] chr7 (3 HSPs)
chr7 (151-313)||(5470128-5470290)
chr7 (379-425)||(5471193-5471239)
chr7 (1-37)||(5468593-5468629)
[»] chr8 (2 HSPs)
chr8 (151-292)||(21306037-21306178)
chr8 (380-436)||(21305894-21305950)
[»] scaffold0247 (2 HSPs)
scaffold0247 (149-298)||(21871-22020)
scaffold0247 (381-433)||(22155-22207)
[»] scaffold0023 (2 HSPs)
scaffold0023 (149-272)||(90068-90191)
scaffold0023 (380-430)||(114207-114257)
[»] scaffold0193 (3 HSPs)
scaffold0193 (149-298)||(24286-24435)
scaffold0193 (380-433)||(25218-25271)
scaffold0193 (149-218)||(24882-24953)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 33904886 - 33904573
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtataatgaatgccgtttattttaggcttacaattagttaaattgaacaactatatatcaaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904886 tgaaggaaaatggcatttagttccacaaagagcaggtataatgaatgccgtttattttaggcttacaattagttaaattgaacaactatatatcaaagca 33904787  T
Q  101 aatgcnnnnnnnntaccatgcataactacttaaattatatgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaatta 200  Q
    |||||        |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904786 aatgcaaaaaaattaccatgcataactgcttaaattatatgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaatta 33904687  T
Q  201 tttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatatgatgctaaggttacacaaacttctagggaataggtaatcttccaaggac 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904686 tttaacccccaacatcaaaagggaaagctttgctgaggatgaagttgatatgatgctaaggttacacaaacttctagggaataggtaatcttccaaggac 33904587  T
Q  301 aagttaatattcat 314  Q
    ||||||||||||||    
T  33904586 aagttaatattcat 33904573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 33763528 - 33763363
Alignment:
Q  130 ttaaattatatgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagct 229  Q
    ||||| ||| |||||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763528 ttaaagtatttgttacacttggcaggattgagtagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagct 33763429  T
Q  230 ttgctgaggatgaagttgatatgatgctaaggttacacaaacttctagggaataggtaatcttcca 295  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||| ||||||    
T  33763428 ttgctgaggatgaagttgatctgatcctaaggttacaaaaacttctaggtaataggtaagcttcca 33763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 33734688 - 33734534
Alignment:
Q  140 tgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgagga 239  Q
    |||||||| || ||||||||||||| || |||||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||    
T  33734688 tgttacacttggcaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttatgccctaacatcaaaagggaaagctttgctgagga 33734589  T
Q  240 tgaagttgatatgatgctaaggttacacaaacttctagggaataggtaatcttcc 294  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  33734588 tgaagttgatatgatcctaaggttacacaaacttctagggaataggtaagcttcc 33734534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 33867174 - 33867039
Alignment:
Q  152 caggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatat 251  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| || || || ||| |||||||||||||||||||    
T  33867174 caggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccccaccatcaatagagagagtttttctgaggatgaagttgatat 33867075  T
Q  252 gatgctaaggttacacaaacttctagggaataggta 287  Q
    |||  ||||||||||||| ||| ||||||| |||||    
T  33867074 gattttaaggttacacaagcttttagggaacaggta 33867039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 33749148 - 33749004
Alignment:
Q  152 caggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatat 251  Q
    ||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||| ||| | |||||| || |||| |||| |||||||||||| ||||||    
T  33749148 caggactgaataggtgcagaaaaagttgtagattgagatggttaaattatttaaacccaaccatcaacagagaaatcttttctgaggatgaagctgatat 33749049  T
Q  252 gatgctaaggttacacaaacttctagggaataggtaatcttccaa 296  Q
    ||| || ||||||||||| ||  | |||||||||||| |||||||    
T  33749048 gatccttaggttacacaacctcttggggaataggtaagcttccaa 33749004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 33698837 - 33698707
Alignment:
Q  151 acaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgata 250  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||| ||||   ||||| || ||||| || || ||||||||| ||||||    
T  33698837 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata 33698738  T
Q  251 tgatgctaaggttacacaaacttctagggaa 281  Q
    |||| ||||||||||||||||||||||||||    
T  33698737 tgattctaaggttacacaaacttctagggaa 33698707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 33821943 - 33821799
Alignment:
Q  152 caggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatat 251  Q
    ||||||||||||| || |||||||| ||||||||||||||| |||||||||||| ||| || || || || |||||| || | || ||||||| ||||||    
T  33821943 caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccctaatattaacagagaaagcattaccgaagatgaagctgatat 33821844  T
Q  252 gatgctaaggttacacaaacttctagggaataggtaatcttccaa 296  Q
    |||  ||||||||||||| || || |||||||||||| |||||||    
T  33821843 gatcataaggttacacaatctcctggggaataggtaagcttccaa 33821799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 33904475 - 33904417
Alignment:
Q  379 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaat 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904475 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaat 33904417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33679894 - 33679837
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaat 437  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33679894 tagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaat 33679837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33698611 - 33698554
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaat 437  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  33698611 tagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaat 33698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33865965 - 33865908
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaat 437  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  33865965 tagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaat 33865908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 33734382 - 33734329
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  33734382 tagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaa 33734329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 33762843 - 33762791
Alignment:
Q  381 agatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaa 33762791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 33821712 - 33821659
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  33821712 tagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaa 33821659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33867342 - 33867303
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33867342 tgaaggaaaatggcatttagttccacaaagagcaggtata 33867303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 33748854 - 33748801
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||| | |||||||||||||| ||||  |||||||||||||||||||||||    
T  33748854 tagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaa 33748801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 33834974 - 33834921
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||| | |||||||||||||| ||||  |||||||||||||||||||||||    
T  33834974 tagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaa 33834921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 33680240 - 33680120
Alignment:
Q  152 caggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatat 251  Q
    |||| |||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||    ||||| || ||||| ||  |  | |||||| |||||||    
T  33680240 caggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaaaccctgcaatcaatagagaaagtttctcccatgatgaaattgatat 33680141  T
Q  252 gatgctaaggttacacaaact 272  Q
    ||| |||||| ||||||||||    
T  33680140 gattctaaggctacacaaact 33680120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33736474 - 33736435
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtata 40  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  33736474 tgaaggaaaatggcatttagtttctcaaagagcaggtata 33736435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33750214 - 33750168
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtataatgaatg 47  Q
    ||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  33750214 tgaaggaaaatggcatttaattcctaaaagagcaggtatagtgaatg 33750168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33763744 - 33763706
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtat 39  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  33763744 tgaaggaaaatggcattttgttccacagagagcaggtat 33763706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33823180 - 33823135
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggtataatgaat 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  33823180 tgaaggaaaatggcatttaattcccaaaagaacaggtataatgaat 33823135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 33846682 - 33846626
Alignment:
Q  213 catcaaaagggaaagctttgctgaggatgaagttgatatgatgctaaggttacacaa 269  Q
    |||||| || |||| |||| |||||||||||| ||||||||| || |||||||||||    
T  33846682 catcaacagagaaatcttttctgaggatgaagctgatatgatccttaggttacacaa 33846626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 149287 - 149000
Alignment:
Q  2 gaaggaaaatggcatttagttccacaaagagcaggtataatgaatgccgtttattttaggcttacaattagttaaattgaacaactatatat--caaagc 99  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||   |||||| ||||| |||||||||||||| | |||||||||||||  | ||||    
T  149287 gaaggaaaatggcatttagttcctcaaagagcaggtaaaatgaatgttatttattctaggcatacaattagttaaacttaacaactatatatatcgaagc 149188  T
Q  100 aaatgcnnnnnnnntaccatgcataactacttaaattatatgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaatt 199  Q
    ||||||         ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  149187 aaatgcaaaaaata-accatgcataattacttaaattatatgttacacatgacagaattgaataggtgccgcaaaagctgtagattgaggtggttaaatt 149089  T
Q  200 atttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatatgatgctaaggttacacaaacttctagggaataggtaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  149088 atttaagccccaacatcaaaagggaaagctttgctgaggatgaagtcgatatgatcctaaggttacacaaacttctagggaataggtaa 149000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 148860 - 148803
Alignment:
Q  379 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaa 436  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  148860 ttagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaa 148803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 313
Target Start/End: Original strand, 5470128 - 5470290
Alignment:
Q  151 acaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgata 250  Q
    |||||||||||||| || |||||||| ||||||||||||||| ||||||||||||  ||||||||||| ||  |||||||| ||||||||||||||||||    
T  5470128 acaggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaagcccaacatcaatagaaaaagcttttctgaggatgaagttgata 5470227  T
Q  251 tgatgctaaggttacacaaacttctagggaataggtaatcttccaaggacaagttaatattca 313  Q
    |||| |||||||||||||||||  |||| ||||||||| ||||| ||| ||| |||| |||||    
T  5470228 tgatcctaaggttacacaaactcttaggaaataggtaagcttccgaggccaaattaaaattca 5470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 425
Target Start/End: Original strand, 5471193 - 5471239
Alignment:
Q  379 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaat 425  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  5471193 ttagatggtcattgattgctggaaggcttccgggtagaacagctaat 5471239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5468593 - 5468629
Alignment:
Q  1 tgaaggaaaatggcatttagttccacaaagagcaggt 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  5468593 tgaaggaaaatggcatttaattcctcaaagagcaggt 5468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 21306178 - 21306037
Alignment:
Q  151 acaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgata 250  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || | ||| ||| ||||||||||||  |||     
T  21306178 acaggattgaatagatgcagaaaaagttgtagattgaggtggttaaattacttaagccccaacatcaacagaggaagattttctgaggatgaagaagatt 21306079  T
Q  251 tgatgctaaggttacacaaacttctagggaataggtaatctt 292  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  21306078 tgatcctaaggttacacaaactactaggaaataggtaatctt 21306037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 21305950 - 21305894
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaa 436  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21305950 tagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaa 21305894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 21871 - 22020
Alignment:
Q  149 tgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttga 248  Q
    |||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||  ||| ||||||| ||||| |  ||| || |||||||||||||    
T  21871 tgacaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaatccctacatcaacagggagaatttttctaaggatgaagttga 21970  T
Q  249 tatgatgctaaggttacacaaacttctagggaataggtaatcttccaagg 298  Q
    | |||| |||||||||||||| |||||||| ||||||||| |||| ||||    
T  21971 tttgattctaaggttacacaaccttctaggcaataggtaagcttcaaagg 22020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 22155 - 22207
Alignment:
Q  381 agatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  22155 agatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaa 22207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 90068 - 90191
Alignment:
Q  149 tgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttga 248  Q
    |||||||||| |||||||| |||||||| |||||||| |||||||| || ||||||| ||| | |||||| |  ||||| ||| ||||||||||||||||    
T  90068 tgacaggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaacccaaccatcaacaaagaaagattttctgaggatgaagttga 90167  T
Q  249 tatgatgctaaggttacacaaact 272  Q
    |||||| ||||||||||| |||||    
T  90168 tatgatcctaaggttacaaaaact 90191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 114207 - 114257
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgt 430  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  114207 tagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgt 114257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 24286 - 24435
Alignment:
Q  149 tgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttga 248  Q
    ||||||||||||||||||| |||||||| |||||||| || ||| |||||||||||| |||  ||||||| |||||   |||| || ||||||||| |||    
T  24286 tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctga 24385  T
Q  249 tatgatgctaaggttacacaaacttctagggaataggtaatcttccaagg 298  Q
    | | ||  ||||||||||||| || ||||||||||||||| | |||||||    
T  24386 tttaattttaaggttacacaacctcctagggaataggtaagcgtccaagg 24435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 25218 - 25271
Alignment:
Q  380 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaa 433  Q
    ||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||    
T  25218 tagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaa 25271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 24882 - 24953
Alignment:
Q  149 tgacaggattgaataggtgccgaaaaagctgtagattgaggtg--gttaaattatttaagccccaacatcaa 218  Q
    ||||| ||||||||||||| ||| |||  |||||| |||||||  |||||||||||||| ||||| ||||||    
T  24882 tgacatgattgaataggtgtcgataaaattgtagactgaggtgtggttaaattatttaaaccccaccatcaa 24953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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