View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_6 (Length: 414)
Name: NF1411_low_6
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 34336230 - 34335845
Alignment:
| Q |
13 |
aatataacccccacaataagaaaacgtgagaaattcattctataaatatgcaaacatcacacataacaaacacaattttccaaaagaaaaatagatgaag |
112 |
Q |
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| T |
34336230 |
aatataacccccacaataagaaaacgtgagaaattcattctataaatatgcaaacatcacacataacaaacacaattttccaaaagaaaaatagatgaag |
34336131 |
T |
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| Q |
113 |
ctacagatccaaatcctttcataaagatcttgtttcatttacataaaaataaacctacacattaacgatgtcaccttcaatgtttgtttcaccgaaaatc |
212 |
Q |
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| T |
34336130 |
ctacagatccaaatcctttcataaagatcttgtttcatttacataaaaataaacctacacattaacgatgtcaccttcaatgtttttttcaccgaaaatc |
34336031 |
T |
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| Q |
213 |
attgtcgtgatgtttgttttggccatgataacatgtgtccctgccaaagccagcaccatagaacattgtctaaggttgaaactgaatccacctccaccag |
312 |
Q |
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| T |
34336030 |
attgtcgtgatgtttgttttggccatgataacatgtgtccctgccaaagccagcaccatagaacattgtttaaggttgaaactgaatccacctccaccag |
34335931 |
T |
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| Q |
313 |
caccgcgtgcggcacttggacatcgaacgaaatttgatttgaatcgcgttgtttgtaaggacgcttttcgtgccgtgggacattct |
398 |
Q |
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| T |
34335930 |
caccgcgtgcggcacttggacatggaacgaaatttgatttgaatcgcgttgtttgtaaggacgcttttcgtgccgtgggacattct |
34335845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 34338572 - 34338505
Alignment:
| Q |
180 |
atgtcaccttcaatgtttgtttcaccgaaaatcattgtcgtgatgtttgttttggccatgataacatg |
247 |
Q |
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| T |
34338572 |
atgtcaccttcgatgtatttttcacgtaaaatcattgttgtggtgtttgtttcggccatgatgacatg |
34338505 |
T |
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