View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_7 (Length: 349)
Name: NF1411_low_7
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 21123074 - 21123387
Alignment:
| Q |
20 |
tgagtggaattcaacattatctaagttgatggtttcaaaggcatctgatgatcatgaaggaggagagagcgatgctttaaattgtatcaagtccagctat |
119 |
Q |
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| T |
21123074 |
tgagtggaattcaacattagctaagttgatggtttcaaaggcatctgatgatcatgaaggaggagagagcgatgctttaaattgtatcaagtccagctat |
21123173 |
T |
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| Q |
120 |
gagtgtttacaaaatagagcagcagaactgatatttctgatgtgctgtatgtttcttgaagactatcacatcccagtagaagatttgttgaggtatgaaa |
219 |
Q |
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| T |
21123174 |
gagtgtttacaaaatagagaagcagaacagatatttctgatgtgctgtatgtttcttgaagactatcacatcccagtagaagatttgttgaggtatgaaa |
21123273 |
T |
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| Q |
220 |
ttggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatgttccaagcacgcataaacaaacttctggattcttgtttgctgatgcatgg |
319 |
Q |
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| T |
21123274 |
ttggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatgttccaagcacacataaacaaacttctggattctcgtttgctgatgcatgg |
21123373 |
T |
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| Q |
320 |
tagcgtgaagatgc |
333 |
Q |
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| T |
21123374 |
tagcgtgaagatgc |
21123387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 21115804 - 21115935
Alignment:
| Q |
177 |
gaagactatcacatcccagtagaagatttgttgaggtatgaaattggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatgttccaag |
276 |
Q |
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| T |
21115804 |
gaagactatcacatcccaacagaagatttgatgaggtttgcatttggactaggtatgggagaaaaattatcattacagtcaatgaggagcttgattcaag |
21115903 |
T |
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| Q |
277 |
cacgcataaacaaacttctggattcttgtttg |
308 |
Q |
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| T |
21115904 |
cagacataaacaaactcttcgattcttgtttg |
21115935 |
T |
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