View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411_low_8 (Length: 348)
Name: NF1411_low_8
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 688686 - 688365
Alignment:
| Q |
11 |
caaagggctaaaaatctgttgtggtgtcacaaccatttttctaattgtagtattagtgatactattaatcttattcctcactgatttcaagcaaaaagac |
110 |
Q |
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| T |
688686 |
caaagggctaaaaatctgttgtggtgtcacaaccatttttctaattgtagtattagtgatactattaatcttattcctcactgatttcaagcaaaaggac |
688587 |
T |
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| Q |
111 |
cccacaattacattacaatcagttaagtttggaaggtttcatcttgatattctcccaattttggatctaaatttatcattagctatattggtcacggttg |
210 |
Q |
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| T |
688586 |
cccacaattacattacaatcagttaagtttggaaggtttcatcttgatattctcccaattttggatctaaatttatcattagctatattggtcacggttg |
688487 |
T |
|
| Q |
211 |
ataatcctaatcatggaagctttacataccaaaacagcagtgcttatcttaattaccgtggtaatcttttggctacagctccattacatgaagacacaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
688486 |
ataatcctaatcatggaagctttacataccaaaacagcagtgcttatcttaattaccgtggtaatcttttggctacagctccattacatgaagacacaat |
688387 |
T |
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| Q |
311 |
tccagctcttaaatcacataac |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
688386 |
tccagctcttaaatcacataac |
688365 |
T |
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