View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_high_2 (Length: 587)
Name: NF14120_high_2
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 37586091 - 37585535
Alignment:
| Q |
18 |
atactagctatattagtgtataaatttgt----gatgtgataagaagagagataaataaaaaataaaatgttgaatgagtagaaaatgatgtggtgttca |
113 |
Q |
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| T |
37586091 |
atactagctatactagtgtataaatttgtttgtgatgcgataagaagagagataaataaaaaataaaatgttgaatgagtaggaaatgatgtggtgtcca |
37585992 |
T |
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| Q |
114 |
aatatcacgattgttcgtgttaattgtataaaattgttatacctcaagaaaaagtgataacactaaagtaaactaaatatcaaaatgattgaatgtgcaa |
213 |
Q |
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| T |
37585991 |
aatatcacgattgttcgtgttaattgtataaaattgttatacctcgagaaaaagtgataacactaaagtaaactaaatatcaaaatgattgaatgtgcaa |
37585892 |
T |
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| Q |
214 |
tgaatctaaaatcacctgtaaatctaaactaagcaaacatcgcagcaagataaagaatcaaacaatgccgcatcaagatgnnnnnnncagaaatatcaaa |
313 |
Q |
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| T |
37585891 |
tgaatctaaaatcacctgtaaatctaaactaagcaaacatcgcaacaagataaagaatcaaacaatgccgcatcaagatgaaaaaaacagaaatatcaaa |
37585792 |
T |
|
| Q |
314 |
aaacccgcttttttaaaatgaagag--aaagagatgcataaggggtgattcctaaaaaagaaaaccattcaaatacccattgannnnnnnncctacattc |
411 |
Q |
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| T |
37585791 |
aaacccgcttttttaaaatgaagagaaaaagagatgcataaggggtgattcctaaaaaagaaaaccattcaaatacccattga-tttttttcctacattc |
37585693 |
T |
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| Q |
412 |
aaatgtccatcctcaatgttaaagatctgtcaatttcctcttgtatcttcccctttatcattttttctaacaggtaagatccagccaggtcctagatgtt |
511 |
Q |
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| T |
37585692 |
aaatgtccatcctcaatgttaaagatctgtcaatttcctattgtatcttcccctttatcattttttctaacaggtaagatccagccaggtcctagatgtt |
37585593 |
T |
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| Q |
512 |
aaatgtctttgaattattaagagatttccttttatacttgcatttgttataggttagt |
569 |
Q |
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| T |
37585592 |
aaatgtctttgaattattaagagatttccttttatacttgcatttgttataggttagt |
37585535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 540
Target Start/End: Complemental strand, 37592801 - 37592680
Alignment:
| Q |
423 |
ctcaatgttaaagatctgtcaatttcctcttgtatcttcccctttatcattttttcta-------acaggtaagatccagccaggtcctagatgttaaat |
515 |
Q |
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| T |
37592801 |
ctcaatgttaaagatctgccaatttcctcttgtatcctc---ttgatcatgtttgctacagtcttacagataagatccagctaggttctagatgttaaaa |
37592705 |
T |
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| Q |
516 |
gtctttgaattattaagagatttcc |
540 |
Q |
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| T |
37592704 |
atctttgaattattaagagatttcc |
37592680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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