View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14120_low_1 (Length: 601)

Name: NF14120_low_1
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14120_low_1
NF14120_low_1
[»] chr8 (5 HSPs)
chr8 (17-587)||(5676094-5676674)
chr8 (27-352)||(5697252-5697580)
chr8 (404-496)||(5697087-5697179)
chr8 (415-496)||(5730277-5730359)
chr8 (101-287)||(25246989-25247180)
[»] chr4 (5 HSPs)
chr4 (82-283)||(20991334-20991538)
chr4 (101-287)||(1101111-1101302)
chr4 (234-288)||(47668931-47668985)
chr4 (129-220)||(46963735-46963828)
chr4 (191-285)||(55250480-55250576)
[»] chr7 (1 HSPs)
chr7 (189-287)||(47235907-47236006)
[»] chr2 (1 HSPs)
chr2 (133-287)||(45040102-45040260)
[»] chr3 (1 HSPs)
chr3 (189-288)||(39650441-39650542)
[»] chr1 (2 HSPs)
chr1 (189-287)||(7093558-7093657)
chr1 (234-288)||(44508244-44508298)
[»] chr6 (1 HSPs)
chr6 (535-569)||(12199741-12199775)
[»] chr5 (2 HSPs)
chr5 (509-568)||(24346794-24346855)
chr5 (533-561)||(11895979-11896007)


Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Complemental strand, 5676674 - 5676094
Alignment:
Q  17 ttacgaacggtaaacttgtaaaacattacaaattgcatgcgaatttaatatcacaacaaaaaacagagggtttcataacaatgcggtagcattgcctacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  5676674 ttacgaacggtaaacttgtaaaacattacaaattgcatgcgaatttaatatcacaacaaaaaacagagggtttcataaaaatgcggtagcattgactacc 5676575  T
Q  117 caaaagaaaaacaaatcttgaataa---gtagcaaaatttttatatgcagctacctcttaatatatatttagttatccaaacaattttgttgattcaaag 213  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5676574 caaaagaaaaacaaatcttgaataataagtagcaaaatttttatatgcagctaccttttaatatatatttagttatccaaacaattttgttgattcaaag 5676475  T
Q  214 aaatataatattaagaaa--tatgataatttatttaatatagagtcaattatagataaacttaagttcttaaaacttgtgaagctggcgttttataaata 311  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5676474 aaatataatattaaaaaaaatatgataatttatttaatatagagtcaattatagataaacttaagttcttaaaacttgtgaagctggcgttttataaata 5676375  T
Q  312 actatgttcctttttattttctctatgtatccatgtactatcattttttacggtgtacatgcaccttttttagtcggtaactgtattttttaagagatag 411  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5676374 accatgttcttttttattttctctatgtatccatgtactatcattttttacggtgtacatgcaccttttttagtcggtaattgtattttttaagagatag 5676275  T
Q  412 tcgggtaattgttctcctttgagagttttcaacttataaattgtaac---taacacccaatttgttatgtttttcaaagtttttcttagcccatttgcta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5676274 tcgggtaattgttctcctttgagagttttcaacttataaattgtaactaataacacccaatttgttatgcttttcaaagtttttcttagcccatttgcta 5676175  T
Q  509 ttgttaagagtccaacatccaata--tgatgacctgacaatgtatttataagtggaggtaatctttatatcaaaaactgat 587  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  5676174 ttgttaagagtcccacatcaaatatgtgatgacctgacaatgtatttataaatggaggcaatccttatctcaaaaactgat 5676094  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 27 - 352
Target Start/End: Complemental strand, 5697580 - 5697252
Alignment:
Q  27 taaacttgtaaaacattacaaattgcatgcgaatttaatatcacaacaaaaaacagagggtttcataacaatgcggtagcattgcctaccc--aaaagaa 124  Q
    |||||||||||||| ||||||||||| | | ||||||| |||||||| |||| | ||||||||||| |||| | |||||||||| |||| |  |||| ||    
T  5697580 taaacttgtaaaacgttacaaattgcctccaaatttaagatcacaaccaaaagcggagggtttcatgacaacgtggtagcattgactacgccaaaaaaaa 5697481  T
Q  125 aaacaaatcttgaataagtagcaaaatttttatatgcagctacctc-ttaatatatatttagttatc-caaacaattttgttgattcaaagaaatataat 222  Q
    ||| |||||||||||||||||| |  || ||||     | |||||| |||||||||||||||||||  |||||||||||||| ||||||||| |||||||    
T  5697480 aaaaaaatcttgaataagtagctag-ttcttatt----gatacctcattaatatatatttagttatttcaaacaattttgtttattcaaagagatataat 5697386  T
Q  223 atta--agaaatatgataatttatttaatatagagtcaattatagataaacttaagttcttaaaacttgtgaagctggcgttttataaataacta-tgtt 319  Q
    ||||  | ||||||||||||||||||||||||| |||||||||| ||||| || | |||||| ||||||||||||| |  ||||||||||||||| ||||    
T  5697385 attataaaaaatatgataatttatttaatatagtgtcaattataaataaatttgacttcttacaacttgtgaagctaggcttttataaataactattgtt 5697286  T
Q  320 c-ctttttattttctctatgtatccatgtactat 352  Q
    |  |||||||||||||| ||||||||||||||||    
T  5697285 ctttttttattttctctctgtatccatgtactat 5697252  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 404 - 496
Target Start/End: Complemental strand, 5697179 - 5697087
Alignment:
Q  404 agagatagtcgggtaattgttctcctttgagagttttcaacttataaattgtaactaacacccaatttgttatgtttttcaaagtttttctta 496  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  5697179 agagatagtcaggtaattgttctcttctgagagttttcaacttataaattgtaactaacactcaatttgttatgcttttcaaagtttttctta 5697087  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 496
Target Start/End: Complemental strand, 5730359 - 5730277
Alignment:
Q  415 ggtaattgttctcctttgagagttttcaacttataaattgtaactaacacccaa-tttgttatgtttttcaaagtttttctta 496  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||    
T  5730359 ggtaattgttctcttgtgagagttttgaacttataaatcgtaactaacacccaattttgttatacttttcaaagtttttctta 5730277  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 25247180 - 25246989
Alignment:
Q  101 ggtagcattgcctaccc-aaaagaaaaacaaatcttgaataagtagcaaaatttttatatgcagctacctc-ttaatatat-atttagtta-tccaaaca 196  Q
    |||||||||| |||||| |||||||||  || ||||||||||  |||  || ||||||||  ||||||| | ||||||||| |||| | || ||||||||    
T  25247180 ggtagcattggctaccccaaaagaaaataaattcttgaataacaagcctaagttttatatatagctaccccattaatatattatttggctactccaaaca 25247081  T
Q  197 attttgttgattcaaagaaatataatattaagaaata-tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 287  Q
    |||||||||||| ||||| |||| ||||||| ||| | ||||||| |||||| | ||| |||||||||||||||| ||   |||||||||||    
T  25247080 attttgttgatttaaagagatattatattaacaaaaattgataatatatttagtttagtgtcaattatagataaatttgtcttcttaaaact 25246989  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 283
Target Start/End: Complemental strand, 20991538 - 20991334
Alignment:
Q  82 gagggtttcataacaatgcggtagcattgcctaccc-aaaagaaaaacaaatcttgaataagtagcaaaatttttatatgcagctacctc-ttaatatat 179  Q
    ||||||||||| | |||| |||||||||  |||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||| |||    
T  20991538 gagggtttcatgaaaatggggtagcattatctaccccaaaagaaaaacaaatcttgaataagtagcatagtttttatatgcagctgcctcattaatgtat 20991439  T
Q  180 atttagtta-tccaaacaattttgttgattcaaagaaatataat-attaagaaata-tgataatttatttaatatagagtcaattatagataaacttaag 276  Q
     ||| | || ||||| ||||||||||  ||| |||| || |||| ||||| ||||| ||||||| ||||||   ||||||||| ||| |||||| || |     
T  20991438 gtttggctactccaagcaattttgtttgttcgaagagatgtaataattaaaaaatattgataatctattta--gtagagtcaactatggataaatttgac 20991341  T
Q  277 ttcttaa 283  Q
    |||||||    
T  20991340 ttcttaa 20991334  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 1101302 - 1101111
Alignment:
Q  101 ggtagcattgcctacccaa-aagaaaaacaaatcttgaataagtagcaaaatttttatatgcagctacctc-ttaatatat-atttagtta-tccaaaca 196  Q
    |||||||||| |||||| | |||||||| ||||||||||||| ||||| || ||||||||  |||| || | ||||||||| |||| | || ||||||||    
T  1101302 ggtagcattggctaccccagaagaaaaaaaaatcttgaataattagcataaattttatatatagctcccccattaatatattatttggctactccaaaca 1101203  T
Q  197 attttgttgattcaaagaaatataatattaagaaata-tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 287  Q
    |||| |||| |||||||| |||| ||||||| ||| | ||||||| |||||| | ||| ||||| |||||||||| ||   |||||||||||    
T  1101202 atttagttggttcaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaact 1101111  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 47668985 - 47668931
Alignment:
Q  234 tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaactt 288  Q
    ||||||| |||||||| ||| |||||||||||||||| || | ||||||||||||    
T  47668985 tgataatctatttaatttagtgtcaattatagataaatttgatttcttaaaactt 47668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 46963735 - 46963828
Alignment:
Q  129 aaatcttgaataagtagcaaaatttttatatgcagctacctc-ttaatatatatttagtta-tccaaacaattttgttgattcaaagaaatata 220  Q
    |||||||||||||  |||  | |||||||||||||||| | | ||||||||||||| | || ||||||||||||| ||| |||||||| |||||    
T  46963735 aaatcttgaataaccagcttagtttttatatgcagctatcccattaatatatatttggctactccaaacaattttattggttcaaagagatata 46963828  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 55250480 - 55250576
Alignment:
Q  191 caaacaattttgttgattcaaagaaatataatattaagaaa-tat-gataatttatttaatatagagtcaattatagataaacttaagttcttaaaa 285  Q
    ||||||||||||||| ||||||||   ||||| |||| ||| ||| |||||| |||||| | ||| |||||||||||||||| || | |||||||||    
T  55250480 caaacaattttgttggttcaaagagggataatgttaataaaatattgataatctatttagtttagtgtcaattatagataaatttgacttcttaaaa 55250576  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 47235907 - 47236006
Alignment:
Q  189 tccaaacaattttgttgattcaaagaaatataatattaagaaata-tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 287  Q
    |||||||||||||||||||| ||||| |||| ||||||| ||| | ||||||| |||||| | ||| |||||||||||||||| ||   |||||||||||    
T  47235907 tccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 47236006  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 45040260 - 45040102
Alignment:
Q  133 cttgaataagtagcaaaatttttatatgcagctacctc-ttaatatat-atttagtta-tccaaacaattttgttgattcaaagaaatataatattaaga 229  Q
    ||||||| | ||||| || |||||||| || ||||| | ||||||||| ||||||| | ||||||||||||||||| |||||||| |||| ||||||| |    
T  45040260 cttgaatgattagcataaattttatatacaactaccccattaatatattatttagtcactccaaacaattttgttgtttcaaagagatattatattaaca 45040161  T
Q  230 aata-tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 287  Q
    || | ||||||| |||||| | |||  ||||||||||||||| ||   |||||||||||    
T  45040160 aaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaact 45040102  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 39650441 - 39650542
Alignment:
Q  189 tccaaacaattttgttgattcaaagaaatataatattaagaaa-tat-gataatttatttaatatagagtcaattatagataaacttaagttcttaaaac 286  Q
    ||||||||||||||||| || |||||   |||||||||| ||| ||| |||||| |||||||| ||| ||||||||||||| || || | ||||||||||    
T  39650441 tccaaacaattttgttggtttaaagagggataatattaataaaatattgataatctatttaatttagcgtcaattatagatgaatttgacttcttaaaac 39650540  T
Q  287 tt 288  Q
    ||    
T  39650541 tt 39650542  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 7093558 - 7093657
Alignment:
Q  189 tccaaacaattttgttgattcaaagaaatataatattaagaaat-atgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 287  Q
    ||||||||||||||||| |||||| | | || |||| ||||||| |||||||| |||||| | ||| ||||||||| |||||| ||   |||||||||||    
T  7093558 tccaaacaattttgttggttcaaacagagatgatatcaagaaataatgataatctatttagtttagtgtcaattattgataaatttgtcttcttaaaact 7093657  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 44508298 - 44508244
Alignment:
Q  234 tgataatttatttaatatagagtcaattatagataaacttaagttcttaaaactt 288  Q
    ||||||| |||||||| ||| |||||||||||||||| || | ||||||||||||    
T  44508298 tgataatctatttaatttagtgtcaattatagataaatttgacttcttaaaactt 44508244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 569
Target Start/End: Complemental strand, 12199775 - 12199741
Alignment:
Q  535 atgacctgacaatgtatttataagtggaggtaatc 569  Q
    ||||||||||||||||||||||||||| |||||||    
T  12199775 atgacctgacaatgtatttataagtgggggtaatc 12199741  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 568
Target Start/End: Complemental strand, 24346855 - 24346794
Alignment:
Q  509 ttgttaagagtccaacatccaatatga--tgacctgacaatgtatttataagtggaggtaat 568  Q
    ||||||||||||| ||||| |||| ||  || ||||||||||||||||||||||| ||||||    
T  24346855 ttgttaagagtcccacatcgaataagacatggcctgacaatgtatttataagtgggggtaat 24346794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 561
Target Start/End: Complemental strand, 11896007 - 11895979
Alignment:
Q  533 tgatgacctgacaatgtatttataagtgg 561  Q
    |||||||||||||||||||||||||||||    
T  11896007 tgatgacctgacaatgtatttataagtgg 11895979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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