View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_10 (Length: 316)
Name: NF14120_low_10
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 29142176 - 29141883
Alignment:
| Q |
18 |
cagaggagttgaatttctatccatcatacataaccaaattaatttagcatcaaaa----ctatactcaccgacaatagaaagagccaaaacattgcattt |
113 |
Q |
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| T |
29142176 |
cagaggagttgaatttctatccatcatacataaccaaattaattcagcataagaactagctatacccaccgacaatagaaagagccaaaacattgcattt |
29142077 |
T |
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| Q |
114 |
ataattgttttcactaaagagactgaactcagctaatataataatacttagcaacaacagaaagagccgaaaccctgcaaagataacatttctctttaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29142076 |
ataattgttttcactaaagagactgaactcagctaatataataatacttagcaacaacagaaagagccgaaaccctgcaaagataacatttctctttaaa |
29141977 |
T |
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| Q |
214 |
gttacaccaaacgaactcattttgtgtcggtaagtaaaagctatgaatcaaatgtgactttctccaaacgtacaaaataaagctacccctatgc |
307 |
Q |
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| T |
29141976 |
gttacaccaaatgaactcattttgtgtcggtaagtaaaagctatgaatcaaatgtgactttctctaaacgtacaaaataaagctacccctatgc |
29141883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 34254747 - 34254678
Alignment:
| Q |
232 |
attttgtgtcggtaagtaaaagctatgaatcaaatgtgactttctccaaacgtacaaaataaagctaccc |
301 |
Q |
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| T |
34254747 |
attttgtgtcggtaagtaaaagctacgtatcaaatgtgactttctccaaacatacaaaacaaagctaccc |
34254678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 29014476 - 29014420
Alignment:
| Q |
201 |
atttctctttaaagttacaccaaacgaactcattttgtgtcggtaagtaaaagctat |
257 |
Q |
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| T |
29014476 |
atttcactttaaagttacactgaactaactcatctagtgtcggtaagtaaaagctat |
29014420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 37896941 - 37896888
Alignment:
| Q |
187 |
cctgcaaagataacatttctctttaaagttacaccaaacgaactcattttgtgt |
240 |
Q |
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||||| ||| ||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
37896941 |
cctgcgaagttaacatttcagtttaaagttacaccaaactaactcattttgtgt |
37896888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 29115362 - 29115327
Alignment:
| Q |
185 |
accctgcaaagataacatttctctttaaagttacac |
220 |
Q |
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| T |
29115362 |
accctgcaaagataacatttctgtttaaagttacac |
29115327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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