View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_12 (Length: 272)
Name: NF14120_low_12
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 35234102 - 35234346
Alignment:
| Q |
18 |
aaataaataaataaaaactatgcaaagtgccaaagtgggcggttatttttctccagattataatatatcattcttgaacaactagtgacccaacaccaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35234102 |
aaataaataaataaaaactatgcaaagtgccaaactgggcggttatttttctccagattataatatatcgttcttgaacaactagtgacccaacaccaaa |
35234201 |
T |
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| Q |
118 |
tgttatatttttgtcataaaacaccaaatgttaaattatactacgtcaattattagtcatatataaattagtcaaatgaaaccgtctatgcaattagggc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35234202 |
tgttatatttttgtcataaaacactaaatgttaaattatactacgtcaattattagtcatatataaattagtcaaatgaaaccgtctatgcaattagggc |
35234301 |
T |
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| Q |
218 |
cacagggnnnnnnnnccttcataaatcaagccacactatcctatg |
262 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
35234302 |
cacaggtttttttttccttcataaatcaagccacactatcctatg |
35234346 |
T |
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