View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_15 (Length: 247)
Name: NF14120_low_15
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 50528649 - 50528452
Alignment:
| Q |
1 |
tgtagttattctgctggattgtgataagattttatgtttcctcattagtgtgaatgggttcagtgtagctctccacattgtcaccttcattatgaagccg |
100 |
Q |
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| T |
50528649 |
tgtagttattctgctggattgtgataagattttatgtttcctcattagtgtgaatgggttcagtgtagctctccacattgtcaccttcattatgaagccg |
50528550 |
T |
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| Q |
101 |
attgagtgtgtatcttatagttagcaaaaactataatttatagcttcaacaaaattagggtgccattgtaattttgtaaaaatcactgcgattgcaaa |
198 |
Q |
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| T |
50528549 |
attgagtgtgtatcttatagttagcaaaaactataatttatagcttcaacaaaattagggtgccagtgtaattttgtaaaaatcactgcgaatgcaaa |
50528452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 50528410 - 50528370
Alignment:
| Q |
198 |
agcaccaaatgtggtacctcttttgatagagatttagtatt |
238 |
Q |
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| T |
50528410 |
agcaccaaatgtggtacctcttttgatagagatttagtatt |
50528370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 45608376 - 45608406
Alignment:
| Q |
125 |
caaaaactataatttatagcttcaacaaaat |
155 |
Q |
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| T |
45608376 |
caaaaactataatttatagcttcaacaaaat |
45608406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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