View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14120_low_2 (Length: 592)
Name: NF14120_low_2
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_2 |
 | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 35188877 - 35189453
Alignment:
| Q |
1 |
aatgaatattgtcgaaatgtcattatagagttaattgtatgacccgtttagttnnnnnnnnnn-tagatgtgttggttggaggaatatggtacttattag |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35188877 |
aatgaatactgtcgaaatgtcattatagagttaattgtatgacccatttagttaaaaaaaaaaatagatgtgttggttggaggaatatggtacttattag |
35188976 |
T |
|
| Q |
100 |
gtaaaattaaatgtgagatccatttagccaccggagctccattgtggatgccataagtaaccctaaatgtgtgagtagttatccttataatactctcttg |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35188977 |
gtaaaattaaatgtgtgatccatttagccaccggagctccattgtggatgccataagtaaccctaaatgtgtgagtagttatccttataatactctcttg |
35189076 |
T |
|
| Q |
200 |
tcatatttataagagacatttatgtcaacgaaatttgtcctatacgattcaaattctgaaccaaatacatcattcgtcaacttagttgacacaaatgtct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35189077 |
tcatatttataagagacatttatgtcaacgaaatttgtcttatacgattcaaattctgaaccaaatacatcattcgtcaacttagttgacacaaatgtct |
35189176 |
T |
|
| Q |
300 |
ctcataatagtacggatggagagtattaaagggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaaga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35189177 |
ctcataatagtacggatggagagtattaaagggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaaga |
35189276 |
T |
|
| Q |
400 |
ctccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaag |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
35189277 |
ctccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcgagtagcttatagattaaag |
35189376 |
T |
|
| Q |
500 |
cttaccattatttatctcaattttacccctgaaattttaattaaatatatcattttgatgtcattagctagttgaac |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35189377 |
cttaccattatttatctcaattttacccctgaaattttaattaaatatatcatttttatgtcattagctagttgaac |
35189453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 329 - 540
Target Start/End: Original strand, 27678976 - 27679193
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacg |
428 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||| | || ||| ||| | ||||||| |
|
|
| T |
27678976 |
agggtgtgtttggcaagacatatttttgagcttatagcttatgtcttataagctcatttgagcaaaaaagac-ctgttcaataacggtcacattctcacg |
27679074 |
T |
|
| Q |
429 |
agcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttat-------agcttaaagcttaccattatttatctcaatt |
521 |
Q |
| |
|
|||||| ||||| |||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
27679075 |
agcttatagcttatttttactagcttatagcgttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaatt |
27679174 |
T |
|
| Q |
522 |
ttacccctgaaattttaat |
540 |
Q |
| |
|
|||||| || ||| ||||| |
|
|
| T |
27679175 |
ttacccatgtaatcttaat |
27679193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 328 - 529
Target Start/End: Original strand, 42139287 - 42139479
Alignment:
| Q |
328 |
aagggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcac |
427 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||||| || |||||| |
|
|
| T |
42139287 |
aagggtctgtttgacaagacccatttttgagcttaaagcttatgtcttataagctcatttgactaaaaaatacatg-tttggtaattgtcactttctcac |
42139385 |
T |
|
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttaccc |
527 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
42139386 |
aagcttatagcttatttttattagcttatagcg-gttttgtcaagctaattcaagtagattat-------agcttatcattatttatctcaattttaccc |
42139477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 499
Target Start/End: Complemental strand, 44810036 - 44809868
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacg |
428 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| | |||||||| ||||||||||||| |||||||| | | ||||||||| ||| || | ||| | |
|
|
| T |
44810036 |
agggtctgtttggtaaggcatgttttcgagcttatagcctatgtcttataagctcatttgactaaaaaaggc-cggtttggtaatggtcactttttcatg |
44809938 |
T |
|
| Q |
429 |
agcttaaagcttgtttt-tactagcttataacgatttttgataagctaattcaagtagcttatagcttaaag |
499 |
Q |
| |
|
|||||| |||| |||| || |||||||| || ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
44809937 |
agcttatagctaattttgta--agcttatagcggtttgtgataagctaattcaagtagcttatggcttaaag |
44809868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 529
Target Start/End: Original strand, 13463319 - 13463479
Alignment:
| Q |
365 |
tcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgattt |
464 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||| ||| || ||| ||| ||| || |||||| | |||| ||||| || |||||| |||||| | | | |
|
|
| T |
13463319 |
tcttatgtcttataagctcgtttgaataaaaaggac-ccgtttaataaacgtcactttctcacaaacttatagcttattcttactatcttatagtgttgt |
13463417 |
T |
|
| Q |
465 |
ttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacccct |
529 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
13463418 |
ttgataaactaattcaagtagcttataacttaaa---tatcattatttatctcaattttacccct |
13463479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 15967755 - 15967875
Alignment:
| Q |
369 |
atgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttga |
468 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| || |||||||| |||| || ||| | |||||| ||||| ||||||||||| |||||| |||||| |
|
|
| T |
15967755 |
atgtcttataagctcatttgactaaaaaagac-ccgtttggtaaatgtcactttcttataagcttatagcttatttttactagcatataacttgttttga |
15967853 |
T |
|
| Q |
469 |
taagctaattcaagtagcttat |
490 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
15967854 |
taagctaattcacatagcttat |
15967875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 491
Target Start/End: Original strand, 44810054 - 44810123
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttata |
491 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||| || || ||||| |||||||||||||||||||||||| |
|
|
| T |
44810054 |
tctcacaagcttatagcttatttttactagcttttagcgttttttaataagctaattcaagtagcttata |
44810123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 44984408 - 44984345
Alignment:
| Q |
429 |
agcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatag |
492 |
Q |
| |
|
|||||| | ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44984408 |
agcttataacttattttcacgagcttataacgttttttgataagctaattcaagtagcttatag |
44984345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 31062967 - 31063015
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagcttaaa |
498 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31062967 |
agcttatagcggtttttgataagctatttcaagtagcttatagcttaaa |
31063015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 491
Target Start/End: Original strand, 5330483 - 5330546
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttata |
491 |
Q |
| |
|
||||||| || |||||||||||| |||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
5330483 |
gagcttataggttgtttttactaacttatagccttttttgataagctaatttaagtagcttata |
5330546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 527
Target Start/End: Original strand, 15804440 - 15804498
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttaccc |
527 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
15804440 |
tttttgataagctaattcaagtagcttat-------agcttatcattatttatctcaattttaccc |
15804498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 12359920 - 12359866
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
12359920 |
tttttactagcttataacattttttgataagttaattcaagtagtttataactta |
12359866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 38809034 - 38808956
Alignment:
| Q |
405 |
tttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagt |
483 |
Q |
| |
|
|||||||| |||| || |||||| |||||| ||||| ||||||||||||||| || ||| |||||||||||| ||||| |
|
|
| T |
38809034 |
tttggtaactgtcactttctcacaagcttatagcttaattttactagcttatagcgttttatgataagctaatccaagt |
38808956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 40909936 - 40909978
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatag |
492 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
40909936 |
agcttataacgttttttgataagctaattcaagtagtttatag |
40909978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 503
Target Start/End: Original strand, 40808451 - 40808532
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||| ||||||| ||||| || |||||| |||||| | ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
40808451 |
tctcatgagcttatagcttattcttactaccttatatcttattttgataagctaattcaattagcttactgcttaaagctta |
40808532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Original strand, 15967876 - 15967915
Alignment:
| Q |
505 |
cattatttatctcaattttacccctgaaattttaattaaa |
544 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
15967876 |
cattatttatctcaattttacccctcaaatcttaattaaa |
15967915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 42034452 - 42034485
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
42034452 |
ttttgataagctaattcaagtagattatagctta |
42034485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 434
Target Start/End: Original strand, 42034320 - 42034423
Alignment:
| Q |
330 |
gggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacga |
429 |
Q |
| |
|
|||||| |||| |||| ||| ||| ||||||||| | ||| ||| |||| |||||||| |||||||||| ||||||| |||| ||| || |||||||| |
|
|
| T |
42034320 |
gggtctatttgctaagccatgtttttgagcttataacatatagcttataagttcatttgactaaaaaagac-ccatttgataatagtcactttctcacga |
42034418 |
T |
|
| Q |
430 |
gctta |
434 |
Q |
| |
|
||||| |
|
|
| T |
42034419 |
gctta |
42034423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 330 - 496
Target Start/End: Original strand, 37083751 - 37083916
Alignment:
| Q |
330 |
gggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacga |
429 |
Q |
| |
|
|||||||||||||||| || || | |||||||| |||||||||| |||||||||||||||||||||||| | || ||||| |||| || |||||||| |
|
|
| T |
37083751 |
gggtctgtttggtaagccacatattcgagcttatagcttatgtcttataagctcatttgattaaaaaagacacg-ttaggtaactgtcactttctcacga |
37083849 |
T |
|
| Q |
430 |
gcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||| ||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37083850 |
gcttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagcttatagctta |
37083916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 328 - 528
Target Start/End: Complemental strand, 9198362 - 9198160
Alignment:
| Q |
328 |
aagggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcac |
427 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||| ||||| || | ||||||| ||| | |||||||||| || ||| |||| ||| || |||||| |
|
|
| T |
9198362 |
aagggtctgtttggttagaaatatttttgagcttatagcttatatcctttaagctctttttactaaaaaagac-ccgtttagtaaccgtcactttctcac |
9198264 |
T |
|
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccat---tatttatctcaatttta |
524 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||| | |
|
|
| T |
9198263 |
gagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagcttaaaacttataattagtatttatctcaatttca |
9198164 |
T |
|
| Q |
525 |
cccc |
528 |
Q |
| |
|
|||| |
|
|
| T |
9198163 |
cccc |
9198160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 442 - 503
Target Start/End: Complemental strand, 38684826 - 38684765
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38684826 |
tttttactagcttatagcgttttttgataagctaattcaagtagcttatagcttaaagctta |
38684765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 541
Target Start/End: Complemental strand, 32326228 - 32326116
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaatt |
521 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
32326228 |
tctcacaagcttgtagcttatttttactagcttatagaggtttttgataagctaattcaagtagcttatag-------cttatcattatttatatcaatt |
32326136 |
T |
|
| Q |
522 |
ttacccctgaaattttaatt |
541 |
Q |
| |
|
||||||||| ||| |||||| |
|
|
| T |
32326135 |
ttacccctgcaatcttaatt |
32326116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 530
Target Start/End: Original strand, 43822489 - 43822631
Alignment:
| Q |
387 |
tgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagc |
486 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| | | ||| |||||| ||||| |||| | || ||||| | ||||||||||||||||||||||||| |
|
|
| T |
43822489 |
tgattaaaaaaga-tccgtttggtaattgtcatttttacacaagcttatagcttattttcatgagattatagtggtttttgataagctaattcaagtagc |
43822587 |
T |
|
| Q |
487 |
ttatagcttaaagcttaccattatttatctcaattttacccctg |
530 |
Q |
| |
|
||| |||||| ||||| || | |||||||| |||||||||||| |
|
|
| T |
43822588 |
ttaaagcttatagcttgtcactttttatctccattttacccctg |
43822631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 32109516 - 32109584
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||| ||||| |||||| |||||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32109516 |
gagcttatagcttatttttaaaagcttaaagcaatttttgataagctaattcaagtagcttatagctta |
32109584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 541
Target Start/End: Original strand, 44539161 - 44539240
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacccctgaaattttaatt |
541 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| || | ||||||| ||||||||| || ||| |||||| |
|
|
| T |
44539161 |
tttttgataagctaattcaagtagctaataacttaaagcttatcacttcttatctccattttacccttgcaatcttaatt |
44539240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 20873260 - 20873206
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20873260 |
tttttactagcttatagtggtttttgataagctaattcaagtaacttatagctta |
20873206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 526
Target Start/End: Complemental strand, 36879181 - 36879024
Alignment:
| Q |
368 |
tatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttg |
467 |
Q |
| |
|
|||||||| |||| |||||||| || ||| || || |||||||| |||| || ||||| | | ||| | ||| |||||||||||||||| | ||||| |
|
|
| T |
36879181 |
tatgtcttataagttcatttgactagtaaaaac-ccgtttggtaactgtcactttctcatgggattataacttatttttactagcttatagcattttttt |
36879083 |
T |
|
| Q |
468 |
ataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacc |
526 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||| ||| ||||| |||||||||| |
|
|
| T |
36879082 |
ataagctaattcaagtagcttagagcttataacttatcatattttattccaattttacc |
36879024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 22827650 - 22827709
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaa |
481 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
22827650 |
tctcacgagcttaaagcttatttttactagcttataacttaatttaataagctaattcaa |
22827709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 33674675 - 33674610
Alignment:
| Q |
337 |
tttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactc |
402 |
Q |
| |
|
|||| |||||||| ||| ||||||||| |||||||||||||||||||||||| || |||| |||| |
|
|
| T |
33674675 |
tttgataagacatgtttttgagcttataccttatgtcttgtaagctcatttgactataaaaaactc |
33674610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 32582352 - 32582411
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttga |
389 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
32582352 |
agggtctgtttggtaagacatgtttttga-cttatagcttatgtcttataagctcatttga |
32582411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 12122880 - 12122841
Alignment:
| Q |
449 |
tagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
12122880 |
tagcttatagcgttttttgataagctaattcaagtagctt |
12122841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 45021535 - 45021476
Alignment:
| Q |
444 |
tttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || ||| ||||||||| ||||| |||| |
|
|
| T |
45021535 |
tttaccagcttataacgttttttgataagctactttaagcagcttatagtttaaaactta |
45021476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 41888901 - 41888947
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
41888901 |
ttttcactagcttataacgttttttgagaagctatttcaagtagctt |
41888947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 495
Target Start/End: Complemental strand, 31466066 - 31466013
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagctt |
495 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||| ||||||||| |
|
|
| T |
31466066 |
tttttactagcttatagtgttttttgataatttaattcaagtagattatagctt |
31466013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 32582458 - 32582523
Alignment:
| Q |
431 |
cttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||| ||||| |||||||||||||||| | ||||||||||| | ||||| |||||||||||||| |
|
|
| T |
32582458 |
cttatagcttatttttactagcttatagccttttttgataaggcagttcaactagcttatagctta |
32582523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 366 - 541
Target Start/End: Complemental strand, 9750083 - 9749910
Alignment:
| Q |
366 |
cttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttt |
465 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||| |||| ||| || || ||||| ||||||| ||| | |||| || || ||||| || |||| |
|
|
| T |
9750083 |
cttatgtcttgtaagttcatttgattaaaaaaaa-tccttttgctaaccatcactttctcatgagcttatagcctatttt-accagtttatagcgttttt |
9749986 |
T |
|
| Q |
466 |
tgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacccctgaaattttaatt |
541 |
Q |
| |
|
||||||| |||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9749985 |
tgataagttaattcaagtaggttataacttatagcttatcattatttatctcaattttacccctgcaatcttaatt |
9749910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 423 - 491
Target Start/End: Original strand, 29052239 - 29052307
Alignment:
| Q |
423 |
ctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttata |
491 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
29052239 |
ctcacaagcttaaagcttaattttactagcttgtaatggtttttgatatgctaattcaagtagcttata |
29052307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 6909597 - 6909672
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| | |||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
6909597 |
gagcttatagcttatttttactagcctataatgtgatttgataagctaattcaaatagctcatagcttaaaactta |
6909672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 485
Target Start/End: Complemental strand, 9618568 - 9618505
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtag |
485 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
9618568 |
tctcacgagtttatagcttgtttttacaagcttatagtatttttttataagctaattcaagtag |
9618505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 4912375 - 4912429
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
4912375 |
tttttactagcttatagcattttttgataaactacttcaagtagcttatatctta |
4912429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 8014740 - 8014707
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
8014740 |
ttttgataagctaattcaattagcttatagctta |
8014707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 724584 - 724628
Alignment:
| Q |
449 |
tagcttataacgatttttgataagctaattcaagtagcttatagc |
493 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
724584 |
tagcttataacactttttgataagctaatttgagtagcttatagc |
724628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 366 - 530
Target Start/End: Complemental strand, 6462532 - 6462361
Alignment:
| Q |
366 |
cttatgtcttgtaa-gctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgattt |
464 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||| ||||||||||| || || |||| | |||||| ||||| |||||||||||||||| | ||| |
|
|
| T |
6462532 |
cttatgtcttataaagctcatttgactaaaaaagaa-ccatttggtaaccgttactttctcgcaagcttatagcttatttttactagcttatagtggttt |
6462434 |
T |
|
| Q |
465 |
ttgataagctaattcaagtagcttatagcttaaag-------cttaccattatttatctcaattttacccctg |
530 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6462433 |
ttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttacccctg |
6462361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 405 - 541
Target Start/End: Original strand, 32882699 - 32882835
Alignment:
| Q |
405 |
tttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttac |
504 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
32882699 |
tttggtaattgtcattttctcacgagcttatagcttatttttttgagcttataatgttttttgataaactaattcaagtagcttaaagcttacagcttct |
32882798 |
T |
|
| Q |
505 |
cattatttatctcaattttacccctgaaattttaatt |
541 |
Q |
| |
|
|| | ||||||||||||||||||||| ||| |||||| |
|
|
| T |
32882799 |
cactttttatctcaattttacccctgcaatcttaatt |
32882835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 503
Target Start/End: Original strand, 4283093 - 4283176
Alignment:
| Q |
420 |
tctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||| | |||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4283093 |
tctctcacgagcttatagcttatttttactggcttataccattttttgataagctaattcaaatagcttatagcttaaacctta |
4283176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 16870027 - 16869953
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16870027 |
tctcacgaacttataccttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagctta |
16869953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 22028652 - 22028778
Alignment:
| Q |
370 |
tgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgat |
469 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || |||||||| ||| || |||||| |||||| ||||| ||||||||| |||| | | ||| |||| |
|
|
| T |
22028652 |
tgtcttataagctcatttgactaaaaaagac-ccgtttggtaaccgtcactttctcacaagcttatagcttatttttactaacttacagaggtttctgat |
22028750 |
T |
|
| Q |
470 |
aagctaattcaagtagcttatagcttaa |
497 |
Q |
| |
|
||||||||||||| |||||||| ||||| |
|
|
| T |
22028751 |
aagctaattcaagcagcttataacttaa |
22028778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 496
Target Start/End: Complemental strand, 41893015 - 41892911
Alignment:
| Q |
391 |
taaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttat |
490 |
Q |
| |
|
||||||||| |||||||||| | |||| |||||||| |||||| || | |||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
41893015 |
taaaaaaga-tccatttggtcaccgtcgttctctcacaagcttatagtctatttttactagcttatagcgtgttttgataagctaattcaagtagcttac |
41892917 |
T |
|
| Q |
491 |
agctta |
496 |
Q |
| |
|
|||||| |
|
|
| T |
41892916 |
agctta |
41892911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 499
Target Start/End: Original strand, 17259381 - 17259523
Alignment:
| Q |
355 |
tgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagctt |
454 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||| |||||| ||| || |||||||| |||||| || |||||||||||| || | || |||||||| |
|
|
| T |
17259381 |
tgagcttatagcttatgtcttataagctcaattggctaaaaa-gac-ccgtttggtaaccgtcgctttcatacgagcttaaagattatattcactagctt |
17259478 |
T |
|
| Q |
455 |
ataacgatttttgataagctaattcaagtagcttatagcttaaag |
499 |
Q |
| |
|
||| || ||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
17259479 |
atagcgtttttttataagttaattcaagtagattatagcttaaag |
17259523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 494
Target Start/End: Original strand, 9004819 - 9004888
Alignment:
| Q |
425 |
cacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagct |
494 |
Q |
| |
|
|||||||||| ||||| |||| | |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
9004819 |
cacgagcttatagcttattttcatgagcttatatcggtttttgataagctaattcaagtagcttatagct |
9004888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 504
Target Start/End: Original strand, 10350439 - 10350572
Alignment:
| Q |
369 |
atgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttga |
468 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||| |||| ||| |||| || ||| || ||||| | ||| ||||||||| |||||||| |||||| | |
|
|
| T |
10350439 |
atgtcttataagttcatttgactaaaaaagacttg-tttgataagtgtcactttcttacaggcttataacttatttttactaacttataac-atttttta |
10350536 |
T |
|
| Q |
469 |
taagctaattcaagtagcttatagcttaaagcttac |
504 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
10350537 |
taaattaattcaagtagcttatagcttaaaacttac |
10350572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 1621630 - 1621557
Alignment:
| Q |
423 |
ctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||| ||||||| ||||| |||||| |||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1621630 |
ctcaagagcttatagcttatttttatgtgcttttagcgttttttgataagctaattcaagtagcttatagctta |
1621557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 31811984 - 31812052
Alignment:
| Q |
332 |
gtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagac |
400 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
31811984 |
gtctgtttggtaagacatgttttttagcttatagcttatgtcttataagctcatttgactaaaacagac |
31812052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 498
Target Start/End: Original strand, 34639821 - 34639856
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagcttaaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34639821 |
ttttgataagctaattcaagtagcttatagcttaaa |
34639856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 503
Target Start/End: Complemental strand, 13838926 - 13838872
Alignment:
| Q |
449 |
tagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
13838926 |
tagcttatagtggtttttgattagctaattcaagtagcttatagcttaaaactta |
13838872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 503
Target Start/End: Complemental strand, 11863425 - 11863376
Alignment:
| Q |
452 |
cttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11863425 |
cttatatcggtttttgataagctaattcaagtagcttata--ttaaagctta |
11863376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 496
Target Start/End: Original strand, 31812082 - 31812126
Alignment:
| Q |
452 |
cttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
31812082 |
cttatagcggtttttgataagctaattcaagtagctcatagctta |
31812126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 6035743 - 6035806
Alignment:
| Q |
326 |
taaagggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttga |
389 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |
|
|
| T |
6035743 |
taaagggcctatttggtaagacatatttttgagcttacagcttatgacttataagctcatttga |
6035806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 544
Target Start/End: Complemental strand, 33583603 - 33583568
Alignment:
| Q |
509 |
atttatctcaattttacccctgaaattttaattaaa |
544 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33583603 |
atttatctcaattttacccctgaaatcttaattaaa |
33583568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 503
Target Start/End: Original strand, 17902646 - 17902720
Alignment:
| Q |
429 |
agcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||| ||||| ||||||||||||||| || | || ||||| || |||||||| ||||||| ||||||||||| |
|
|
| T |
17902646 |
agcttatagcttatttttactagcttattgcgttcttcgataacctgattcaagtggcttataacttaaagctta |
17902720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 1787084 - 1787016
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||| ||||| |||| ||||| |||| || |||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
1787084 |
gagcttatagctttttttacctagcatatagcgcttttcgataagctacttcaagtagctgatagctta |
1787016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 2941935 - 2941995
Alignment:
| Q |
436 |
agcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
2941935 |
agcttatttttactagcttattgcattttttgataagctaatccaaatagcttagagctta |
2941995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 366 - 496
Target Start/End: Complemental strand, 50036 - 49907
Alignment:
| Q |
366 |
cttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttt |
465 |
Q |
| |
|
|||||||||| | | ||||||||| |||||||||| || |||||||| ||| || ||||||||||||| ||||| |||||| |||||||| || ||| |
|
|
| T |
50036 |
cttatgtcttattaactcatttgactaaaaaagac-ccgtttggtaacggtcactttctcacgagcttatagcttatttttaagagcttatagcggtttg |
49938 |
T |
|
| Q |
466 |
tgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49937 |
tgataagctaattcaagtagcttatagctta |
49907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 28)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 377 - 530
Target Start/End: Original strand, 39276306 - 39276458
Alignment:
| Q |
377 |
taagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaa |
476 |
Q |
| |
|
||||||||| ||| |||||| ||||| |||| ||| |||| | ||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39276306 |
taagctcatatgactaaaaatgactcg-tttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaa |
39276404 |
T |
|
| Q |
477 |
ttcaagtagcttatagcttaaagcttaccattatttatctcaattttacccctg |
530 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| | | |||||| |||||||||| |
|
|
| T |
39276405 |
ttcaagtagcttaaagcttgtagcttgtcattttctctctcaagtttacccctg |
39276458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 496
Target Start/End: Original strand, 21501594 - 21501686
Alignment:
| Q |
404 |
atttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||| |||| || ||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21501594 |
atttggtaactgtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatagctta |
21501686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 329 - 496
Target Start/End: Complemental strand, 44555867 - 44555713
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacg |
428 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| |||||||||| ||||||||||||| |||| ||||| || |||||||| ||| |
|
|
| T |
44555867 |
agggtctgtttggtaagacataattttgagcttatagcttatgtcttttaagctcatttgactaaataagac-ccgtttggtaaccgtc----------- |
44555780 |
T |
|
| Q |
429 |
agcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
| ||| ||||| ||||||||||||| || || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
44555779 |
-gtttatagcttctttttactagcttttagcgttttttgataagctaatccaagtagcttatagctta |
44555713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 422 - 541
Target Start/End: Original strand, 1162212 - 1162328
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaatt |
521 |
Q |
| |
|
|||||||| |||| ||||| || |||||| |||||| || | ||||||||||||||||||| || ||| | |||||| ||| |||||||||||||||| |
|
|
| T |
1162212 |
tctcacgaacttatagcttattcttactatcttatagcgttgtttgataagctaattcaaggagtttacaacttaaaactt---attatttatctcaatt |
1162308 |
T |
|
| Q |
522 |
ttacccctgaaattttaatt |
541 |
Q |
| |
|
|||||||| ||| ||||||| |
|
|
| T |
1162309 |
ttacccctaaaaatttaatt |
1162328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 3535168 - 3535237
Alignment:
| Q |
427 |
cgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||| ||| ||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535168 |
cgagtttatagcttatttttactaacttatagcgttttttgataagctaattcaagtagcttatagctta |
3535237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 366 - 496
Target Start/End: Complemental strand, 20988951 - 20988821
Alignment:
| Q |
366 |
cttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaa-agcttgtttttactagcttataacgattt |
464 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| | |||||||| ||| || ||||| |||||| | ||||| |||||||| || || | ||| |
|
|
| T |
20988951 |
cttatgtcttataagctcatttgactaaaaaagacacg-tttggtaaccgtcactttctcatgagctttatagcttatttttactgactattagcatttt |
20988853 |
T |
|
| Q |
465 |
ttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
20988852 |
ttgataagctaattcaagtagcttatagctta |
20988821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 485
Target Start/End: Complemental strand, 23051834 - 23051682
Alignment:
| Q |
332 |
gtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagc |
431 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| ||||||||| ||||| ||||||| |||||| ||| | |||||||| ||| || |||||||||| |
|
|
| T |
23051834 |
gtctgtttggtaaggtctgtttttgagcttatagtttatgtcttataagcccatttgactaaaaaggac-ctgtttggtaacagtcactttctcacgagc |
23051736 |
T |
|
| Q |
432 |
ttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtag |
485 |
Q |
| |
|
||| ||||| |||||| || ||||| || ||| |||||||||||||||||||| |
|
|
| T |
23051735 |
ttacagcttatttttatgagtttatagcggtttgtgataagctaattcaagtag |
23051682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 52831453 - 52831524
Alignment:
| Q |
425 |
cacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||| ||||| |||| | ||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52831453 |
cacgagcttgtagcttattttcatgagcttataaaggtttttgataagctaattcaagtagcttatagctta |
52831524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 524
Target Start/End: Complemental strand, 5646060 - 5645978
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaatttta |
524 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||| |||||||||||||||| ||| | |||| |||||||||| ||||||||| |
|
|
| T |
5646060 |
tttttactagcttatatcatttttttataagctgattcaagtagcttataatttataacttatcattatttatttcaatttta |
5645978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 24418292 - 24418246
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24418292 |
agcttatagcggtttttgataagctaattcaagtagcttatagctta |
24418246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 31736195 - 31736149
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
31736195 |
agcttataacgattttttataagctaattcaagtagtttatagctta |
31736149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 529
Target Start/End: Original strand, 49262530 - 49262630
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttaccc |
527 |
Q |
| |
|
||||||| | ||| |||||||| |||||| || ||| |||||| |||||||||| ||| ||| ||||||||||| |||||||||||||||||||| || |
|
|
| T |
49262530 |
gagcttataacttatttttactgacttatatcggatttcgataaggtaattcaagtcgct-ataccttaaagcttatcattatttatctcaattttatcc |
49262628 |
T |
|
| Q |
528 |
ct |
529 |
Q |
| |
|
|| |
|
|
| T |
49262629 |
ct |
49262630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 30071665 - 30071593
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagact |
401 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
30071665 |
agggtctgtttggtaagacatgtttttgagtttatagcttatgtcatataagctcatttggctaaaaaagact |
30071593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 52327328 - 52327371
Alignment:
| Q |
453 |
ttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
52327328 |
ttataacgttttttgataagctaattcaagtagcttaaagctta |
52327371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 12637603 - 12637652
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagcttaaag |
499 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12637603 |
agcttattgcgatttttgataaactaattcaagtagctaatagcttaaag |
12637652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 13615257 - 13615216
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13615257 |
ttttcgataagctaatttaagtagcttatagcttaaagctta |
13615216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 503
Target Start/End: Original strand, 30070089 - 30070219
Alignment:
| Q |
369 |
atgtcttgtaagctcatttga-ttaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttg |
467 |
Q |
| |
|
||||||| ||||||||||||| | |||||| |||| ||||||||| ||| | |||||||| |||| ||| |||||||||||||||| | | |||| |
|
|
| T |
30070089 |
atgtcttataagctcatttgactaaaaaaaaactctatttggtaa-cgtcacgttctcacgaacttatagc---tttttactagcttatagc-agttttt |
30070183 |
T |
|
| Q |
468 |
ataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |
|
|
| T |
30070184 |
ttaagctaattcaagtagcttaaagctgaaagctta |
30070219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 41963436 - 41963392
Alignment:
| Q |
452 |
cttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
41963436 |
cttatagcgatttgtgataagctaattcaagtaacttatagctta |
41963392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 47789554 - 47789510
Alignment:
| Q |
452 |
cttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
47789554 |
cttatagcggttttcgataagctaattcaagtagcttatagctta |
47789510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 529
Target Start/End: Complemental strand, 2103389 - 2103310
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacccct |
529 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| |||| | |||| |||| | | |||||||||||||||| |
|
|
| T |
2103389 |
agcttataacctattttgataagctaattcaattagcttatggcttttaacttatcattttatctctcaattttacccct |
2103310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 20435465 - 20435528
Alignment:
| Q |
466 |
tgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttacccct |
529 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| | ||| || | |||||||||||||||||||| |
|
|
| T |
20435465 |
tgataagctaatttaagtagcttatagtttataacttgtcactttttatctcaattttacccct |
20435528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 24474128 - 24474171
Alignment:
| Q |
453 |
ttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24474128 |
ttatagcggttttttataagctaattcaagtagcttatagctta |
24474171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 26026693 - 26026747
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| |||||| |||||| |
|
|
| T |
26026693 |
tttttactagcttatagcgtgttttgataaactaattcaaggagcttagagctta |
26026747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 503
Target Start/End: Complemental strand, 52986523 - 52986473
Alignment:
| Q |
453 |
ttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
52986523 |
ttataacagtttttgataagctagttcaagtagtttatagcttaacgctta |
52986473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Original strand, 54683698 - 54683736
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
54683698 |
agcttataacgttttttgaaaagctaattcaagtagctt |
54683736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 503
Target Start/End: Complemental strand, 17425731 - 17425678
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||||| || || || ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
17425731 |
agcttatagcggttattaataagctaactcaagtagcctatagcttaaagctta |
17425678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 41173810 - 41173843
Alignment:
| Q |
470 |
aagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
41173810 |
aagctaattcaagttgcttatagcttaaagctta |
41173843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 496
Target Start/End: Original strand, 41758558 - 41758586
Alignment:
| Q |
468 |
ataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41758558 |
ataagctaattcaagtagcttatagctta |
41758586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 355 - 503
Target Start/End: Complemental strand, 32467912 - 32467766
Alignment:
| Q |
355 |
tgagcttatttcttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagctt |
454 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||||||| ||| ||||| ||| || ||| ||||||| ||||| ||||||||||||| |
|
|
| T |
32467912 |
tgagcttatagcttatgtcttataagctcatttgactaaaaaagacctgatt-ggtaaccgtcacttcctcgtgagcttatagcttatttttactagctt |
32467814 |
T |
|
| Q |
455 |
ataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32467813 |
atagtcgtttttgataagc-aattcaagtagcttatagcttaaagctta |
32467766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 527
Target Start/End: Original strand, 35764593 - 35764687
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttaccc |
527 |
Q |
| |
|
||||||| ||||| ||||||| ||||| ||||| ||||| |||||||||||||||||| ||| || |||||| |||||||||| |||||||||||| |
|
|
| T |
35764593 |
gagcttatagcttatttttacaagcttgtaacgtttttttataagctaattcaagtaggtta-----tatagcttatcattatttatttcaattttaccc |
35764687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 496
Target Start/End: Original strand, 41470037 - 41470155
Alignment:
| Q |
377 |
taagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaa |
476 |
Q |
| |
|
||||||||| | | |||||||||| || |||||||| |||| | ||||||||||||| | ||| ||||||||||| ||| | ||||| ||||||||| |
|
|
| T |
41470037 |
taagctcatataactaaaaaagac-ccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttataagctaa |
41470135 |
T |
|
| Q |
477 |
ttcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41470136 |
ctcaagtagcttatagctta |
41470155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 18892348 - 18892295
Alignment:
| Q |
444 |
tttactagcttataacgatttttgataagctaattcaagtagcttatagcttaa |
497 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
18892348 |
tttactagcttatagcgctttctgataagctaattcaagtagcttatatcttaa |
18892295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 925882 - 925946
Alignment:
| Q |
468 |
ataagctaattcaagtagcttatagcttaaagcttac-------cattatttatctcaattttac |
525 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
925882 |
ataagctaattcaagtagcttgtagcttaaagcttacatcttttcattatttatctcaattttac |
925946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 487
Target Start/End: Complemental strand, 14354651 - 14354542
Alignment:
| Q |
377 |
taagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaa |
476 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||||| |||| | ||| |||||| | || || |||||||||||||||| || ||||| |||||| || |
|
|
| T |
14354651 |
taagctcatatgactaaaaaagac-ccatttggtaacagtcgttttctgtcgagctaatagtttatttttactagcttatagcgtttttttataagccaa |
14354553 |
T |
|
| Q |
477 |
ttcaagtagct |
487 |
Q |
| |
|
|||||||||| |
|
|
| T |
14354552 |
ctcaagtagct |
14354542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 24523902 - 24523832
Alignment:
| Q |
429 |
agcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaag |
499 |
Q |
| |
|
|||||| | ||| |||||||||||||| | | ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
24523902 |
agcttataacttatttttactagcttagagaggtttttgatatgctgattcaagtagcttatagcttaaag |
24523832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 2595230 - 2595282
Alignment:
| Q |
449 |
tagcttataacgatttttgataagctaattcaagtagcttatagcttaaagct |
501 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
2595230 |
tagcttatagtgttttttgataagctaattcaagtagcatatagtttaaagct |
2595282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 27316748 - 27316672
Alignment:
| Q |
420 |
tctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||| ||| | ||| |||||| ||||||||| | |||||| |||| |||||||||||| |||||||||| |
|
|
| T |
27316748 |
tctctcacgagtttatatcttatttttattagcttatagcattttttggtaagttaattcaagtagtttatagctta |
27316672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 503
Target Start/End: Complemental strand, 38288954 - 38288879
Alignment:
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||| || || |||||| |||||||||| ||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
38288954 |
gagcttatagattatttttataagcttataactgtttgtgataagctaattcaagtagattataatttaaagctta |
38288879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 496
Target Start/End: Original strand, 43408580 - 43408615
Alignment:
| Q |
461 |
atttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43408580 |
atttttgataagctaattcaagtagcatatagctta |
43408615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 37740629 - 37740675
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||| || ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
37740629 |
agcttatagcggtttttgatatgctaatccaagtagcttatagctta |
37740675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 21266862 - 21266821
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttata |
491 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
21266862 |
agcttataacgttttttaaaaagctaattcaagtagcttata |
21266821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 28444816 - 28444783
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
28444816 |
ttttgataagctaatttaagtagcttatagctta |
28444783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 41669744 - 41669785
Alignment:
| Q |
447 |
actagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
41669744 |
actagcttataacgttttttgagaagctatttcaagtagctt |
41669785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 29861350 - 29861410
Alignment:
| Q |
436 |
agcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||| |||||||||| | ||| || |||||||||||||||| || |||||||||||||| |
|
|
| T |
29861350 |
agcttatttttactagttcatagcgtattttgataagctaattgaattagcttatagctta |
29861410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 1415733 - 1415836
Alignment:
| Q |
424 |
tcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaatttt |
523 |
Q |
| |
|
||||||||||| ||||| |||||| || ||||| || ||||||||||||||||||||||||||| |||||| ||||||| |||| |||||| |||||| |
|
|
| T |
1415733 |
tcacgagcttatagcttatttttattaatttatagcgttttttgataagctaattcaagtagcttgtagcttcaagcttatcattttttatcctaatttt |
1415832 |
T |
|
| Q |
524 |
accc |
527 |
Q |
| |
|
|||| |
|
|
| T |
1415833 |
accc |
1415836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 503
Target Start/End: Complemental strand, 35926748 - 35926667
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| || | ||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
35926748 |
tctcacgagcttatagcttatttttactagcttgtagtgttttttgataagctgattcaagtagcttatagcttacagctta |
35926667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 10518245 - 10518306
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10518245 |
tttttattagcttataacattttttgataagctaatttaagtagcttatagcttaaagctta |
10518306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 329 - 493
Target Start/End: Complemental strand, 52596442 - 52596278
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaa-aaaagactccatttggtaattgtcgctctctcac |
427 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||||||| ||||||| | |||||||| ||| | ||||| |
|
|
| T |
52596442 |
agggtctgtttggtaagacatgtttttgagcttatagataatgtgttataagctcatttgattaaaaaaagac-ctgtttggtaaccgtcattttctcag |
52596344 |
T |
|
| Q |
428 |
gagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagc |
493 |
Q |
| |
|
|| || ||||| |||||||||||||| | || |||||||| |||| |||||||||||||||||| |
|
|
| T |
52596343 |
gaactattagcttatttttactagcttaaagcggtttttgatgagctgattcaagtagcttatagc |
52596278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 31795575 - 31795465
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaa---gcttaccattatttatctca |
518 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||||| ||||| |||||||||| ||| |||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
31795575 |
tctcacgagcttatggtttgtttttactagtttataacatttttttataagctaatccaaatagcgaatagcttaaagttgcttatcattatttatctca |
31795476 |
T |
|
| Q |
519 |
attttacccct |
529 |
Q |
| |
|
| ||||||||| |
|
|
| T |
31795475 |
agtttacccct |
31795465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 20003997 - 20004046
Alignment:
| Q |
447 |
actagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20003997 |
actagcttatagcgttttttgataagctaattcaagtagcttatagctta |
20004046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 36021062 - 36021124
Alignment:
| Q |
426 |
acgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
36021062 |
acgagcttatagcttatttttactagcttataacttattttgataagctaattcaattagctt |
36021124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 20792006 - 20791965
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20792006 |
tttttgataagctaattcaagtagcttatagcttaaatctta |
20791965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 496
Target Start/End: Complemental strand, 22593762 - 22593647
Alignment:
| Q |
381 |
ctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgattttt-gataagctaattc |
479 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||| || |||||||||| | ||||| |||||| |||||||| | ||||| ||||||||||||| |
|
|
| T |
22593762 |
ctcattttattaaaaaagac-cagtttggtaaccgtcactttctcacgagcctgtagcttatttttatcagcttatagcagtttttcgataagctaattc |
22593664 |
T |
|
| Q |
480 |
aagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22593663 |
aagtagcttatagctta |
22593647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 46315686 - 46315642
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagct |
494 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
46315686 |
agcttataacgttttttgataagctatttcaagtagcttatagct |
46315642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 11337398 - 11337347
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagcttaccattattta |
513 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11337398 |
ttttttataagctaattcaagtagcttatagcttgtagcttatcattattta |
11337347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 11495417 - 11495366
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagcttaaagcttaccattattta |
513 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11495417 |
ttttttataagctaattcaagtagcttatagcttgtagcttatcattattta |
11495366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 497
Target Start/End: Complemental strand, 28736337 - 28736207
Alignment:
| Q |
366 |
cttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttt |
465 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| | |||||| ||| | | |||| |||||| ||||| ||||||| | |||||| | |||| |
|
|
| T |
28736337 |
cttatgtcttataagctcatttgactaaaaaagac-cagcctggtaaccgtcattttttcacaagcttacagcttatttttaccaacttatagcattttt |
28736239 |
T |
|
| Q |
466 |
tgataagctaattcaagtagcttatagcttaa |
497 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
28736238 |
agataagctaattcaagtagcgtatagcttaa |
28736207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 32359180 - 32359251
Alignment:
| Q |
425 |
cacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||| ||||| |||| | |||||| | |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
32359180 |
cacgagcttatagcttattttcatgagcttacagcgatttttgataagctaattcaagtaacctatagctta |
32359251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 503
Target Start/End: Complemental strand, 7097779 - 7097737
Alignment:
| Q |
461 |
atttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7097779 |
atttttaataagctaattcaagtatcttatagcttaaagctta |
7097737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 37131545 - 37131512
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37131545 |
ttttgataagctaattcaagtagcttatagctta |
37131512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 15942523 - 15942491
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagct |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15942523 |
tttttgataagctaattcaagtagcttatagct |
15942491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 23908977 - 23908941
Alignment:
| Q |
489 |
atagcttaaagcttaccattatttatctcaattttac |
525 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23908977 |
atagcttaaagcttatcattatttatctcaattttac |
23908941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 42747603 - 42747683
Alignment:
| Q |
423 |
ctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||| |||||| ||||| ||||| |||||||| | ||||| ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
42747603 |
ctcacaagcttatagcttaattttatgagcttatagtgtttttttataagctaattcaagtaacttataacttaaagctta |
42747683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 11337509 - 11337451
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcattt |
387 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
11337509 |
agggtctaattggtaagacttatttttgagcttatagcttatgtcttataagctcattt |
11337451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 11495528 - 11495470
Alignment:
| Q |
329 |
agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcattt |
387 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
11495528 |
agggtctaattggtaagacttatttttgagcttatagcttatgtcttataagctcattt |
11495470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 35058587 - 35058649
Alignment:
| Q |
423 |
ctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtag |
485 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||| || ||||| ||||||||||||||||| |
|
|
| T |
35058587 |
ctcacgagcttatagcttatttttacgggcttatagcggtttttagtaagctaattcaagtag |
35058649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 38322170 - 38322120
Alignment:
| Q |
446 |
tactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||| || |||||||||||| | |||||||||||||||||||| |
|
|
| T |
38322170 |
tactagcttattgcgttttttgataagccacttcaagtagcttatagctta |
38322120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 2061067 - 2061034
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
2061067 |
ttttgataagctaattcaagtagcttaaagctta |
2061034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 30418401 - 30418471
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagct |
494 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||| || || |||| |||||| |||| |||||||||||||||| |
|
|
| T |
30418401 |
tctcacaagcttatagctt--ttttactagcttgtagcgtttttggataagttaatccaagtagcttatagct |
30418471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 527
Target Start/End: Complemental strand, 28870647 - 28870583
Alignment:
| Q |
463 |
ttttgataagctaattcaagtagcttatagcttaaagcttaccattatttatctcaattttaccc |
527 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| | ||||||||||| | | |||||||||||||| |
|
|
| T |
28870647 |
ttttgataagctaatttaattagcttaaagcctgtagcttaccattttctctctcaattttaccc |
28870583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 496
Target Start/End: Original strand, 32602836 - 32602868
Alignment:
| Q |
464 |
tttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
32602836 |
tttgataagctaattcaaatagcttatagctta |
32602868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 424 - 496
Target Start/End: Original strand, 166589 - 166659
Alignment:
| Q |
424 |
tcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| || ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
166589 |
tcacgagcttataacttatttttactagcttatagcg--ttttgataagctaatccaagtagcctatagctta |
166659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 503
Target Start/End: Original strand, 29234675 - 29234735
Alignment:
| Q |
443 |
ttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
29234675 |
ttttactagcttataacttatttcgataagctaattcaattagcttatagcttaaatctta |
29234735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 15050823 - 15050897
Alignment:
| Q |
422 |
tctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||| ||| | |||||||| ||||||| || ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
15050823 |
tctcacgagcttatagcatatttttacttgcttatagcgtcttttgatgaactaattcaagtagcttaaagctta |
15050897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 42967765 - 42967811
Alignment:
| Q |
450 |
agcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
42967765 |
agcttataacgtttttcgataagctaattcaagtagcttaaagctta |
42967811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 503
Target Start/End: Complemental strand, 44235592 - 44235494
Alignment:
| Q |
405 |
tttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
||||||||||||| || ||||| ||||||| ||||| |||| | |||||||| | ||||||||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
44235592 |
tttggtaattgtcactttctcaagagcttatagcttattttaatgagcttatagtgttttttgataagttaattcaagtaacatataaattaaagctta |
44235494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 529
Target Start/End: Complemental strand, 87305 - 87266
Alignment:
| Q |
490 |
tagcttaaagcttaccattatttatctcaattttacccct |
529 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
87305 |
tagcttaaagcttaacaatatttatctcaattttacccct |
87266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 472
Target Start/End: Complemental strand, 12473631 - 12473526
Alignment:
| Q |
366 |
cttatgtcttgtaagctcatttgattaaaaaagactccatttggtaattgtcgctctctcacgagcttaaagcttgtttttactagcttataacgatttt |
465 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||| || |||||||| || | ||||| ||||||| ||||| ||||||||||||| || || |||| |
|
|
| T |
12473631 |
cttatggcttataagctcatttgactaaaaaagac-ccgtttggtaaccgtaattttctcatgagcttatagcttatttttactagcttgtagcgttttt |
12473533 |
T |
|
| Q |
466 |
tgataag |
472 |
Q |
| |
|
| ||||| |
|
|
| T |
12473532 |
ttataag |
12473526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 33982321 - 33982275
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
33982321 |
ttttcactagcttatagcgttttttgataagctatttcaagtagctt |
33982275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 43544902 - 43544856
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagctt |
488 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
43544902 |
ttttcactagcttatagcgctttttgataagctatttcaagtagctt |
43544856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 502
Target Start/End: Complemental strand, 12473167 - 12473138
Alignment:
| Q |
473 |
ctaattcaagtagcttatagcttaaagctt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12473167 |
ctaattcaagtagcttatagcttaaagctt |
12473138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 13438499 - 13438446
Alignment:
| Q |
443 |
ttttactagcttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||||| |||| || ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
13438499 |
ttttactagcatatagcgtttttttataagataattcaagtaacttatagctta |
13438446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 503
Target Start/End: Complemental strand, 24432802 - 24432765
Alignment:
| Q |
466 |
tgataagctaattcaagtagcttatagcttaaagctta |
503 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24432802 |
tgataagctaattcaagtagcttataacttaaaactta |
24432765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 497
Target Start/End: Complemental strand, 25130015 - 25129942
Alignment:
| Q |
424 |
tcacgagcttaaagcttgtttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaa |
497 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
25130015 |
tcacgagcttacaactcatttttactaacttataacttattttgataagcaaattcaattagctaatagcttaa |
25129942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 496
Target Start/End: Complemental strand, 28175623 - 28175591
Alignment:
| Q |
464 |
tttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
28175623 |
tttgataagctaactcaagtagcttatagctta |
28175591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 496
Target Start/End: Original strand, 29132501 - 29132544
Alignment:
| Q |
452 |
cttataacgatttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
29132501 |
cttataac-attttttatcagctaattcaagtagcttatagctta |
29132544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 496
Target Start/End: Complemental strand, 339069 - 339035
Alignment:
| Q |
462 |
tttttgataagctaattcaagtagcttatagctta |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
339069 |
tttttgataagctaattcaagtagcttatagctta |
339035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 28546 - 28600
Alignment:
| Q |
442 |
tttttactagcttataacgatttttgataagctaattcaagtagcttatagcttaaa |
498 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
28546 |
tttttagtagcttataactattt--gataagctaattcaattaggttatagcttaaa |
28600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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