View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_4 (Length: 493)
Name: NF14120_low_4
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 293 - 487
Target Start/End: Original strand, 9269548 - 9269742
Alignment:
| Q |
293 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
392 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
9269548 |
tttaacaaatcaagtcaccgaatatgttattatttcataagctccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
9269647 |
T |
|
| Q |
393 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
487 |
Q |
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| T |
9269648 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
9269742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 9269325 - 9269516
Alignment:
| Q |
90 |
gataatactccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatacgcacaaattacttcttaattcacc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
9269325 |
gataatactccacacaagaaatcaaacaaagagagaaacacatgatttcatcttctttccctgttcaatctgatacgcacaacttacttctaaattcacc |
9269424 |
T |
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| Q |
190 |
ctaattcttcgattctacggtctccatgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattt |
281 |
Q |
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| T |
9269425 |
ctaattcttcgattctatgctctccttgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattt |
9269516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 293 - 486
Target Start/End: Complemental strand, 10854473 - 10854280
Alignment:
| Q |
293 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
392 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
10854473 |
tttaacaaatcaagtcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
10854374 |
T |
|
| Q |
393 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctc |
486 |
Q |
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| T |
10854373 |
aataagagattcatgagatatagttatcaatatgtttgtgaatatggaatatggaatattgtatgtagttagattagtttatttgcaatgtctc |
10854280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 91 - 282
Target Start/End: Complemental strand, 10854695 - 10854504
Alignment:
| Q |
91 |
ataatactccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatac-gcacaaattacttcttaattcacc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||| |
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| T |
10854695 |
ataatactccacacaagaaatcaaacaaagagagagacacatgatttcatcttctttccttgttcaatctgatactgcacaacttacttctaaattcacc |
10854596 |
T |
|
| Q |
190 |
ctaattcttcgattctacggtctccatgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggatttt |
282 |
Q |
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||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10854595 |
ctaattctttgattctaccctctccttgattacatcaattg-tttaaattagatttttccattggaagaaggtagtgaatcaaggaggatttt |
10854504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 3025787 - 3025868
Alignment:
| Q |
66 |
ttaaattcaataaatcaaatggttgataatactccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttcc |
149 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||| |||||| |||| |||||| || ||||||||| |||| |||||||||| |
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| T |
3025787 |
ttaaatccaataaatcaaatggttgataatgctcaacacaacaaattaaacaa--agcgagacacatgattttgtcttctttcc |
3025868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 23733683 - 23733639
Alignment:
| Q |
403 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
447 |
Q |
| |
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||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23733683 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23733639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 23740875 - 23740831
Alignment:
| Q |
403 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
447 |
Q |
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||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23740875 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23740831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 23617025 - 23616982
Alignment:
| Q |
404 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
447 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23617025 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23616982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 23648366 - 23648323
Alignment:
| Q |
404 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
447 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23648366 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23648323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 12001088 - 12001140
Alignment:
| Q |
20 |
cgttgacaccaggtatacgtcaaaagactta-accagatctcaatcattaaat |
71 |
Q |
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|||||||||||||| || ||||||||||||| |||| ||||||| |||||||| |
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| T |
12001088 |
cgttgacaccaggtgtaagtcaaaagacttacaccaaatctcaaccattaaat |
12001140 |
T |
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