View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_6 (Length: 413)
Name: NF14120_low_6
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 41410231 - 41410614
Alignment:
| Q |
13 |
aatatattaagtcaaggcatgtctcaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaatt |
112 |
Q |
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| T |
41410231 |
aatatattaagtcaaggcatgtcttaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaatt |
41410330 |
T |
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| Q |
113 |
ttctttgaattttgttcagagatacgtatacaaaaacccttgcataaaagaaagacatatacgaaaacttaaggnnnnnnnntgacgagtgatgatgtaa |
212 |
Q |
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| T |
41410331 |
ttctttgaattttgttcagagatacgtatacaaaaacccttgcataaaagaaagacatatacgaaaacttaaggaaaaaaaatgacgagtgatgatgtaa |
41410430 |
T |
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| Q |
213 |
tagaagttaaattaaaattaatctgaannnnnnnncaactctctcataaaaagtcgagtcttccttcttcttgttcttttttattggcctcaagtcttct |
312 |
Q |
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|||||||||||| |||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410431 |
tagaagttaaataaaaaataatctgatttttttttcaactctctcat-aaaagtcgaggcttccttcttcttgttcttttttattggcctcaagtcttct |
41410529 |
T |
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| Q |
313 |
tctctcgtgtaccctaattaaaactaattaaaagaagagttaagaatcatttcagtacttgacaaaatatggaggtgttaaatta |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41410530 |
tctctcgtgtaccctaattaaaactaattaaaagaagagttaagaatcatttcagtacttgacaaaatatggagttgttaaatta |
41410614 |
T |
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