View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14120_low_8 (Length: 372)
Name: NF14120_low_8
Description: NF14120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14120_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 34593238 - 34593579
Alignment:
| Q |
14 |
atcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaaattttattnnnnnnnnnnggata |
113 |
Q |
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| T |
34593238 |
atcaagaggaaacaccgacatctcaactggttgctggcacctcggagaacttccatcctctaccgcctacctcaaaaattttattaaaaaaaaa-ggata |
34593336 |
T |
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| Q |
114 |
gtgtatgaaatcatgggatcaaaaaacaagaaaattacctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaataacag |
213 |
Q |
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| T |
34593337 |
gtgtatgaaatcaagggatcaaaa-acaagaaagttacctccaaatcattagtacttttcactttctttccttgaactcctagtttgtctgcaataacag |
34593435 |
T |
|
| Q |
214 |
aaggaaaattagattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctatac |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593436 |
aaggaaaatttgattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctatac |
34593535 |
T |
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| Q |
314 |
cttggtttactgcaataacttccgagttggttattagttcatat |
357 |
Q |
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| T |
34593536 |
cttggtttactgcaataacttccgagttagttattaattcatat |
34593579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 34577609 - 34577665
Alignment:
| Q |
150 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgca |
206 |
Q |
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| T |
34577609 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgca |
34577665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 34577750 - 34577794
Alignment:
| Q |
313 |
ccttggtttactgcaataacttccgagttggttattagttcatat |
357 |
Q |
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| T |
34577750 |
ccttggtttactgcaataacttctgagttgcttatcaattcatat |
34577794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 32589846 - 32589905
Alignment:
| Q |
150 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata |
209 |
Q |
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| T |
32589846 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata |
32589905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 32600294 - 32600353
Alignment:
| Q |
150 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata |
209 |
Q |
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| T |
32600294 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata |
32600353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 24884099 - 24884037
Alignment:
| Q |
145 |
aaattacctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaa |
207 |
Q |
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| T |
24884099 |
aaatcacctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaa |
24884037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 32589981 - 32590026
Alignment:
| Q |
311 |
taccttggtttactgcaataacttccgagttggttattagttcata |
356 |
Q |
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| T |
32589981 |
taccttggtttactgcaataacttcagagttgcttatcaattcata |
32590026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 32600429 - 32600474
Alignment:
| Q |
311 |
taccttggtttactgcaataacttccgagttggttattagttcata |
356 |
Q |
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||||||||||||||||||||||||| |||||| |||| | |||||| |
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| T |
32600429 |
taccttggtttactgcaataacttcagagttgcttatcaattcata |
32600474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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