View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_high_1 (Length: 808)
Name: NF14121_high_1
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 40 - 413
Target Start/End: Original strand, 42663198 - 42663570
Alignment:
| Q |
40 |
aatgtttattttgaaattttatatggattgtgtcctgcctttcatcaatcaggagaaataattatttcgtacattatgaaataaacagctctcacactta |
139 |
Q |
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| T |
42663198 |
aatgtttattttgaaattttatatggattgtgtcctgcctttcatcaatcaggagaaataattatttcgtacattatgaaataa-cagctctcacactta |
42663296 |
T |
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| Q |
140 |
taattcatccatcattgcttctattttaggtcatgttttagtgtcccttctaacatgctatatgcaaggattaatcagcttttataattttttgtgataa |
239 |
Q |
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| T |
42663297 |
taattcatccatcattgcttctatattaggtcatgttttagtgtcccttctaacatactatatgcaaggattaatcagctgttataattttttgtgataa |
42663396 |
T |
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| Q |
240 |
cattttactgataagtgtttggtgaatggtttgcatagtttaaaaaaggtgtgaatgccgaataagatatttgttctcttttaagtcaggttctgtttta |
339 |
Q |
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| T |
42663397 |
cattttactgataagtgtttggtgaatggtttgcatagtttaaaaaaggtgtgaatgccgaataagatatttgttctcttttaagtcaggttctgtttta |
42663496 |
T |
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| Q |
340 |
gtggatgcttcatatacttaattatgattttgtataatttataacgaaagtttattaattaaattgtgttcatg |
413 |
Q |
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| T |
42663497 |
gtggatgcttcatatacttaattatgattttgtataatttataacgaaagtttattaattaaattgtgttcatg |
42663570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 533 - 795
Target Start/End: Original strand, 42663660 - 42663922
Alignment:
| Q |
533 |
ataggcggataagatccatgtcaatgtacggaaagaattggtaaaagaatttcagacgaatattgaggagggagcagcctacgagcttgcgcaagttatg |
632 |
Q |
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| T |
42663660 |
ataggcggataagatccatgccactttacggaaaggattggtaaaagaattttagacgaatattgaggagggagcagcctacgagcttgcgcaagttatg |
42663759 |
T |
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| Q |
633 |
gtcggttttaaaaatggtccattcaagctgacttcgcataaatataagatcaatatgatgcaaaattcttggtggacaaaaatctcaaacctgagtaaca |
732 |
Q |
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| T |
42663760 |
gtcggttttaaaaatggtccattcaagctgacttcacataaatataagatcaatatgatgcaaaactctaggtggacaaaaatctcaaacctgagtaaca |
42663859 |
T |
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| Q |
733 |
tgtagacactgaaatgaccttcaatgttgtctacgaggaagtattccgcaacgtgtagtataa |
795 |
Q |
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| T |
42663860 |
tgtagacactgaaatgacctccaatgttgtctacaaggaagtattccgtaacgtgtagtataa |
42663922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 42663557 - 42663621
Alignment:
| Q |
429 |
aaattgtgttcatgttgataagtgtttaagttgccacctaaatctttgtgatcatttaccaaagg |
493 |
Q |
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| T |
42663557 |
aaattgtgttcatgttgataagtgtttaagttgccacctaaatctttgtgatcatttaccaaagg |
42663621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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