View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14121_high_11 (Length: 364)
Name: NF14121_high_11
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 29287644 - 29287313
Alignment:
| Q |
16 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29287644 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
29287545 |
T |
|
| Q |
116 |
aaacataatttttgttatatggttttgtttttggagtgtaacatcaatacactctttagcatatattttccaatccctcaaaattttgtgtgaatcatat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29287544 |
aaacataatttttgttatatggttttgtttttggagggtaacatcaatacactctttagcatatattttccaatccctcaaaa--ttgtgtgaatcatat |
29287447 |
T |
|
| Q |
216 |
ttatattttgaagagtaaatcattgtttcagtcttcaaaattgtaataatcgatttagtgaacatccattgtttttatttaaaagagtttagattaggtg |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29287446 |
ttatattttgaaaagtaaatcattgtttcagtcttcaaaattgtaataattgatttagtgaacatccattgtttttatttaaaagaatttagattaggtg |
29287347 |
T |
|
| Q |
316 |
tacggtggtgtggtgtgctgacatagtttatatg |
349 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |
|
|
| T |
29287346 |
tacggtggtgtggcgtgctaacatagtttatatg |
29287313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University