View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14121_high_13 (Length: 305)
Name: NF14121_high_13
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 42883419 - 42883713
Alignment:
| Q |
1 |
tatatgttgcagatgataatgttggaaggagcccaagcgactacagaaacggttgatgcgttgagaactggagcatttgctatgaagcgcatgcaaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42883419 |
tatatgttgcagatgataatgttggaaggagcccaagcgactacagaaacggttgatgcgttgagaactggagcatttgctatgaagcgcatgcaaacag |
42883518 |
T |
|
| Q |
101 |
aattgtacatagcaatgtttatgaattttcctttctttcattgttgatgtacacttgtatgttttacctctttcatgcttgttctaaaacctgagaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42883519 |
aattgtacatagcaatgtttatgaattttcctttctttcattgttgatgtacacttgtatgttttacctctttcatgcttgttctaaaacctgag-aata |
42883617 |
T |
|
| Q |
201 |
ctgtatgaacagatatcttcatgtttttagctaatattgtttcatgctcttgctcttgatcggttgctatannnnnnncagcaatcttgatgatgt |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42883618 |
ctgtatgaacaaatatcttcatgtttttagctaatattgtttcatgctcttgctcttgatcggttgctatatttttttcagcaatcttgatgatgt |
42883713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 34405790 - 34405854
Alignment:
| Q |
11 |
agatgataatgttggaaggagcccaagcgactacagaaacggttgatgcgttgagaactggagca |
75 |
Q |
| |
|
||||||||||||| ||||| || |||| || || |||||||| |||||||||||||| |||||| |
|
|
| T |
34405790 |
agatgataatgttagaaggtgctaaagccaccacggaaacggtagatgcgttgagaacaggagca |
34405854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University