View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_high_19 (Length: 242)

Name: NF14121_high_19
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_high_19
NF14121_high_19
[»] chr3 (1 HSPs)
chr3 (3-229)||(8224196-8224458)
[»] chr5 (6 HSPs)
chr5 (93-155)||(25188948-25189010)
chr5 (87-155)||(25232392-25232460)
chr5 (87-155)||(25296550-25296618)
chr5 (87-155)||(25236586-25236654)
chr5 (87-155)||(25300746-25300814)
chr5 (87-155)||(25188437-25188505)
[»] chr8 (3 HSPs)
chr8 (87-154)||(19976034-19976101)
chr8 (87-154)||(21016732-21016799)
chr8 (87-155)||(27860773-27860841)
[»] chr4 (1 HSPs)
chr4 (87-155)||(5073795-5073863)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 8224458 - 8224196
Alignment:
Q  3 ttctctccatctaatattcttgcagcaattcccataatcgtatcaaaacttaagtatgtgtctgtcgttgtgtatgaacgttaa---------------- 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  8224458 ttctctccatctaatattcttgcagcaattcccataatcgtatcaaaacttaagtatgtgtctgtcgttgtgtatgaacgttaaagtctttcgtccactc 8224359  T
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattct---------------------tcataataccccacg 165  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||                     |||||||| ||||||    
T  8224358 aaatagatgcatcacacccggcttcaaattgactgtgcctagtgcccataccgctcacaattcttcacaggaagcaaaaacgaactcataata-cccacg 8224260  T
Q  166 acccaaagaaagcatacaccactgtccataagttttacacagtttctgtattttgcgacaatat 229  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  8224259 acccaaagaaagcatacaccattgtccataagttttccacagtttctgtattttgcgacaatat 8224196  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 25188948 - 25189010
Alignment:
Q  93 acgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||    
T  25188948 acgcatcacacccgacttcaaattgaccatgcctagtgcccatactgctcgcaattcttcata 25189010  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 25232392 - 25232460
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||||||||||| | ||| ||||||||    
T  25232392 aaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatactgcccgcaagtcttcata 25232460  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 25296550 - 25296618
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||||||||||| | ||| ||||||||    
T  25296550 aaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatactgcccgcaagtcttcata 25296618  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 25236586 - 25236654
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||||||||| ||| ||| ||| ||||    
T  25236586 aaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatacttctcgcaagtctccata 25236654  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 25300746 - 25300814
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||||||||| ||| ||| ||| ||||    
T  25300746 aaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatacttctcgcaagtctccata 25300814  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 25188437 - 25188505
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    ||||||||||||||||| || ||||||||||||  ||||| ||||||||||| | | ||| ||||||||    
T  25188437 aaatagacgcatcacactcggcttcaaattgaccatgcctagtgcccatacttcccgcaagtcttcata 25188505  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 19976034 - 19976101
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcat 154  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||    
T  19976034 aaatagacgcatcacacccgacttcaaattgaccgtgcctaatgcccataccgctcgcaagtcttcat 19976101  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 21016799 - 21016732
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcat 154  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||    
T  21016799 aaatagacgcatcacacccgacttcaaattgaccgtgcctaatgcccataccgctcgcaagtcttcat 21016732  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 27860773 - 27860841
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    ||||||||||||||||| || |||||||||||   ||| || |||||||||||||| ||| ||||||||    
T  27860773 aaatagacgcatcacactcggcttcaaattgatcatgcttgatgcccatactgctcgcaagtcttcata 27860841  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 5073863 - 5073795
Alignment:
Q  87 aaatagacgcatcacacccgacttcaaattgactgtgcctggtgcccatactgctcacaattcttcata 155  Q
    |||||||||  |||||||||||||||||||||  ||||||  |||||||| ||||| ||| ||||||||    
T  5073863 aaatagacgtgtcacacccgacttcaaattgatcgtgcctaatgcccatattgctcgcaagtcttcata 5073795  T

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