View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_high_23 (Length: 228)

Name: NF14121_high_23
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_high_23
NF14121_high_23
[»] chr8 (2 HSPs)
chr8 (1-203)||(12893414-12893621)
chr8 (161-203)||(6470784-6470826)
[»] chr4 (6 HSPs)
chr4 (120-203)||(50033020-50033110)
chr4 (120-201)||(19631308-19631396)
chr4 (120-203)||(5123328-5123418)
chr4 (117-228)||(19731311-19731429)
chr4 (120-203)||(19525885-19525975)
chr4 (120-188)||(23255935-23256003)
[»] chr1 (6 HSPs)
chr1 (120-203)||(32565746-32565836)
chr1 (120-228)||(50481278-50481393)
chr1 (120-203)||(47222214-47222304)
chr1 (120-179)||(16751655-16751714)
chr1 (131-168)||(23340804-23340841)
chr1 (139-179)||(38738180-38738220)
[»] chr3 (3 HSPs)
chr3 (120-228)||(3547566-3547681)
chr3 (139-203)||(10437301-10437372)
chr3 (139-179)||(9145521-9145561)
[»] chr5 (5 HSPs)
chr5 (137-203)||(39036427-39036500)
chr5 (120-202)||(41411330-41411419)
chr5 (148-228)||(42421713-42421800)
chr5 (120-179)||(16954690-16954749)
chr5 (137-173)||(30779953-30779989)
[»] chr2 (3 HSPs)
chr2 (120-202)||(32776072-32776161)
chr2 (120-179)||(42951340-42951399)
chr2 (126-203)||(40898646-40898730)
[»] chr6 (2 HSPs)
chr6 (119-202)||(33121541-33121631)
chr6 (117-179)||(30237162-30237224)
[»] chr7 (1 HSPs)
chr7 (120-179)||(33613216-33613275)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 12893414 - 12893621
Alignment:
Q  1 tgagtttatttatctcctatgataattagttgaccactcaatagactctctacaattgatcacgttcttttaaaattttaaatgttaagaacactctttt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||| ||||||||| |||||||||| |||||||| |||    
T  12893414 tgagtttatttatctcctataataattagttgaccactcaatagactct--acatatgatcacgtttttttaaaatgttaaatgttaggaacactccttt 12893511  T
Q  101 taaaacaaccaaaacatagtactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttca 193  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||       | |||||||||||||||||    
T  12893512 taaaacaaccaaaccatagtacttcctccgtcctataatagatcatttagttgactccgacacacgtatcaatgcatatgttttatctttgatatcttca 12893611  T
Q  194 attctctact 203  Q
    ||||||||||    
T  12893612 attctctact 12893621  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 6470826 - 6470784
Alignment:
Q  161 cacacgtaccaatgtatatctttgatatcttcaattctctact 203  Q
    |||| |||||||| | |||||||||||||||||||||||||||    
T  6470826 cacatgtaccaatttttatctttgatatcttcaattctctact 6470784  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 50033020 - 50033110
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctact 203  Q
    ||||| |||| ||| ||| ||||| ||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||    
T  50033020 tactctctccgtcccatattagatgacttagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaattctctact 50033110  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 19631308 - 19631396
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctcta 201  Q
    ||||| |||| ||||||| ||||| ||||| ||||||||||||||||||||||||       | |||||||||||||||||||||||||    
T  19631308 tactctctccgtcctatattagatgacttaattgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaattctcta 19631396  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 5123418 - 5123328
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctact 203  Q
    ||||||||||||||   ||||||| ||||||||||||| ||||||||||||||||       | |||||||||||||||||||| ||||||    
T  5123418 tactccctccatccctcaatagatgacttagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaattatctact 5123328  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 19731429 - 19731311
Alignment:
Q  117 tagtactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctactnnnnnn 209  Q
    ||||||||||| | | | ||| ||||| || |||||||||||||||||||||||||||       | ||||||||||||||||||| |||||||          
T  19731429 tagtactcccttcgttccatattagatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatgctctactaaaaca 19731330  T
Q  210 nttatgaaaatttaatatt 228  Q
     ||||||||||||||||||    
T  19731329 attatgaaaatttaatatt 19731311  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 19525975 - 19525885
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctact 203  Q
    |||||||||| ||||||| || || || ||||||||| |||||||||||||||||       | |||||||||||||||||||||| ||||    
T  19525975 tactccctccgtcctatattaaatgacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaattctttact 19525885  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 23255935 - 23256003
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatatctttgatat 188  Q
    |||||||||| |||   ||||||| || |||||||||| |||||||||||||||| |||| ||| ||||    
T  23255935 tactccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatattttatat 23256003  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 32565746 - 32565836
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtata-------tctttgatatcttcaattctctact 203  Q
    |||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||| |||       |||||||||||||||||||||||||    
T  32565746 tactccctccgtccttcaatagatgacttagttgactctgacacacgtaccaatgcatatgttttctctttgatatcttcaattctctact 32565836  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 50481278 - 50481393
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctactnnnnnnntt 212  Q
    |||||||||| ||| ||| ||||| |||||||||| |||||||||||||||||||       | ||||||||||||||||||||||||| |       ||    
T  50481278 tactccctccgtcccatattagatgacttagttgattccgacacacgtaccaatgcatatgttttatctttgatatcttcaattctctattaaaaaaatt 50481377  T
Q  213 atgaaaatttaatatt 228  Q
    ||||||||||||||||    
T  50481378 atgaaaatttaatatt 50481393  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 47222214 - 47222304
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctact 203  Q
    |||| ||||||||| ||| || || || |||||||||||||||||||||||||||       | |||||||||||||||||||||| ||||    
T  47222214 tacttcctccatcccatattaaatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaattctttact 47222304  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 16751714 - 16751655
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    |||||||||| | | ||| ||||| || ||||||||||||||||||||||||||| ||||    
T  16751714 tactccctccgttccatattagatgacctagttgactccgacacacgtaccaatgcatat 16751655  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 23340804 - 23340841
Alignment:
Q  131 tcctataatagatcacttagttgactccgacacacgta 168  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  23340804 tcctatattagataacttagttgactccgacacacgta 23340841  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 38738220 - 38738180
Alignment:
Q  139 tagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    ||||| || ||||||||||||||||||||||||||| ||||    
T  38738220 tagatgacctagttgactccgacacacgtaccaatgcatat 38738180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 3547681 - 3547566
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctactnnnnnnntt 212  Q
    |||||||||| ||| ||| ||||| || || ||||||||||||||||||||||||       | |||||||||||||||||||| ||||||       ||    
T  3547681 tactccctccgtcccatattagatgacctaattgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaattatctactaaaaaaatt 3547582  T
Q  213 atgaaaatttaatatt 228  Q
    ||||||||||||||||    
T  3547581 atgaaaatttaatatt 3547566  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 10437301 - 10437372
Alignment:
Q  139 tagatcacttagttgactccgacacacgtaccaatgta-------tatctttgatatcttcaattctctact 203  Q
    ||||| ||||||||||||| ||||||||||||||| ||       |||||||||||||||||||||| ||||    
T  10437301 tagatgacttagttgactctgacacacgtaccaatttatatgttttatctttgatatcttcaattctttact 10437372  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 9145521 - 9145561
Alignment:
Q  139 tagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    ||||| || ||||||||||||||||||||||||||| ||||    
T  9145521 tagatgacctagttgactccgacacacgtaccaatgcatat 9145561  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 39036427 - 39036500
Alignment:
Q  137 aatagatcacttagttgactccgacacacgtaccaatgta-------tatctttgatatcttcaattctctact 203  Q
    ||||||| || |||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||    
T  39036427 aatagatgacatagttgactctgacacacgtaccaatgtatatgttttatctttgatatcttcaattctctact 39036500  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 41411419 - 41411330
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctac 202  Q
    |||||||||| |||   ||||||| |||||||||||| |||||||||||||||||       | ||||||||||||||||||||||||||    
T  41411419 tactccctccgtccctcaatagatgacttagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaattctctac 41411330  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 42421713 - 42421800
Alignment:
Q  148 tagttgactccgacacacgtaccaatgtatat-------ctttgatatcttcaattctctactnnnnnnnttatgaaaatttaatatt 228  Q
    ||||||||||||||||||||||| ||| ||||       ||||||||||||||||||||||||       ||||||||||||||||||    
T  42421713 tagttgactccgacacacgtacctatgcatatgttttatctttgatatcttcaattctctactaaaaaaattatgaaaatttaatatt 42421800  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 16954690 - 16954749
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    |||||||||| |||   ||||||| ||||||||||||| |||||||||||||||| ||||    
T  16954690 tactccctccgtccctcaatagatgacttagttgactctgacacacgtaccaatgcatat 16954749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 30779989 - 30779953
Alignment:
Q  137 aatagatcacttagttgactccgacacacgtaccaat 173  Q
    ||||||| || ||||||||||||||||||||||||||    
T  30779989 aatagatgacctagttgactccgacacacgtaccaat 30779953  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 32776161 - 32776072
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctac 202  Q
    |||||||||| |||  |||||||| || ||||||||||||| |||||||||||||       | ||||||||||||||||||||||||||    
T  32776161 tactccctccgtcccttaatagatgacctagttgactccgatacacgtaccaatgcatatgttttatctttgatatcttcaattctctac 32776072  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 42951340 - 42951399
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    ||||||||||||| |||| ||||| |  ||||||||||||||||||||| ||||||||||    
T  42951340 tactccctccatcttatattagatgatctagttgactccgacacacgtatcaatgtatat 42951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 40898646 - 40898730
Alignment:
Q  126 ctccatcctataatagatcacttagttgactccgacacacgtaccaatgta-------tatctttgatatcttcaattctctact 203  Q
    ||||||| |||| ||||| |  |||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||    
T  40898646 ctccatcttatattagatgatctagttgactccgacacacgtactaatgtatatgttttatctttgatatcttcaattctctact 40898730  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 33121541 - 33121631
Alignment:
Q  119 gtactccctccatcctataatagatcacttagttgactccgacacacgtaccaatg-------tatatctttgatatcttcaattctctac 202  Q
    ||||||||||| |||  ||||| || || ||||||||| |||||||||||||||||       | ||||||||||||||||||||||||||    
T  33121541 gtactccctccgtcccttaataaatgacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaattctctac 33121631  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 30237162 - 30237224
Alignment:
Q  117 tagtactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    ||||||||||||| |||   ||||||| || |||||||||| |||||||||||||||| ||||    
T  30237162 tagtactccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatat 30237224  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 33613216 - 33613275
Alignment:
Q  120 tactccctccatcctataatagatcacttagttgactccgacacacgtaccaatgtatat 179  Q
    |||||||||||||| ||| ||||| || |||||||||||||||| | |||||||| ||||    
T  33613216 tactccctccatccaatattagatgacctagttgactccgacacgcataccaatgcatat 33613275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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