View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14121_high_9 (Length: 380)
Name: NF14121_high_9
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 42883436 - 42883092
Alignment:
| Q |
15 |
tatcatctgcaacatatattacaagtatatgataaaaataatacttacnnnnnnnttaaccatgttgccccactagcagtaaaaaatataagtagaaact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42883436 |
tatcatctgcaacatatattacaagtatatgataaaaataatacttacaaaaaaattaatcatgttgccccactagcagtaaaaaatataagtagaaact |
42883337 |
T |
|
| Q |
115 |
gaactcgatccgccagtcagactgggaagacttgtaaccagtcctctaactggtccaatcaatcctaaaaaacaggtaatataatgggtgaactaatcac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42883336 |
aaactcgatccgccagtcagactgggaagacttgtaaccagtcctctaactggtccaatcaatcctaaaaaacaggtaatataatgggtgaactaatcac |
42883237 |
T |
|
| Q |
215 |
agcccatgaaccagtcaaactgtgcggatcaatcatgattcaaatgatcgaactgctccgtcttttgtagtttttctagaatcatgtaacaatagttgtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42883236 |
agcccatgaaccagtcaaactgtgcggatcaatcatgattcaaatgatcgaactgctctgtcttttgtagtttttctagaatcatgtaacaatagtt--- |
42883140 |
T |
|
| Q |
315 |
tggttctcaaataataaccaaaactatccatctcttttaatttgtctaaa |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42883139 |
--gttctcaaataataaccaaaactatccatctcttttaatttgtctaaa |
42883092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University