View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_low_10 (Length: 416)

Name: NF14121_low_10
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_low_10
NF14121_low_10
[»] chr8 (3 HSPs)
chr8 (18-286)||(19975684-19975952)
chr8 (18-286)||(21016881-21017149)
chr8 (21-281)||(27860447-27860706)
[»] chr3 (2 HSPs)
chr3 (15-200)||(8224437-8224621)
chr3 (196-398)||(8225945-8226149)
[»] chr4 (2 HSPs)
chr4 (18-286)||(5073945-5074213)
chr4 (43-285)||(10177057-10177298)
[»] scaffold0417 (1 HSPs)
scaffold0417 (15-286)||(4496-4767)
[»] chr5 (14 HSPs)
chr5 (126-283)||(38232609-38232766)
chr5 (18-146)||(25239945-25240073)
chr5 (18-146)||(25304098-25304226)
chr5 (18-133)||(25236389-25236504)
chr5 (18-133)||(25300549-25300664)
chr5 (18-145)||(25188228-25188355)
chr5 (181-286)||(25188113-25188218)
chr5 (181-282)||(25232073-25232174)
chr5 (181-282)||(25296231-25296332)
chr5 (18-145)||(25232184-25232310)
chr5 (18-145)||(25296342-25296468)
chr5 (14-87)||(38232517-38232590)
chr5 (153-262)||(26789097-26789206)
chr5 (222-286)||(21364142-21364206)
[»] chr1 (1 HSPs)
chr1 (18-236)||(34516382-34516602)
[»] chr6 (1 HSPs)
chr6 (78-146)||(21805614-21805682)
[»] scaffold0013 (1 HSPs)
scaffold0013 (214-283)||(98491-98560)
[»] scaffold0291 (1 HSPs)
scaffold0291 (214-283)||(16690-16759)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 19975952 - 19975684
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| | || || ||||| |||||||||||||| || |||| ||||||| |||| ||||    
T  19975952 gaatattggatggagagaaccttgtatgaaatagcaggggctatcagaactccattgttaattgataatgttactaagaacagattgtttggtcattatg 19975853  T
Q  118 ccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaaggg 217  Q
    |||  || ||| |||| ||||||||||| || ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||| ||| |||||  ||||    
T  19975852 ccaaagttttgatggacttagacctttccgagaaccttttttaagaagttatggtggaacgggaaggttatgcatttccggtggcaattgaatatgaggg 19975753  T
Q  218 actgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatcc 286  Q
     |||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  19975752 gctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatcc 19975684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 21016881 - 21017149
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| | || || ||||| |||||||||||||| || |||| ||||||| |||| ||||    
T  21016881 gaatattggatggagagaaccttgtatgaaatagcaggggctatcagaactccattgttaattgataatgttactaagaacagattgtttggtcattatg 21016980  T
Q  118 ccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaaggg 217  Q
    |||  || ||| |||| ||||||||||| || ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||| ||| |||||  ||||    
T  21016981 ccaaagttttgatggacttagacctttccgagaaccttttttaagaagttatggtggaacgggaaggttatgcatttccggtggcaattgaatatgaggg 21017080  T
Q  218 actgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatcc 286  Q
     |||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  21017081 gctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatcc 21017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 27860706 - 27860447
Alignment:
Q  21 tattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatgcca 120  Q
    |||| ||| |||||||| |||||||||||||  ||||||||| | || |||||| | |||||||||||||| |||||||| ||| || |||| || ||||    
T  27860706 tattggatagagagaaccttgtatgaaatagtgggggctatcagaactccgttgataattgataatgttactaaaaacatgttgattggtcattaagcca 27860607  T
Q  121 gggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaagggact 220  Q
     ||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||   |||||||||||||| |  |||||||| |||||| ||||  |    
T  27860606 aggttttggtggatttagacctttctgagaacattttt-atgaagttatggtggaacatgaaggttatgcattcctagtggaaattgaatacgaggggtt 27860508  T
Q  221 gcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggtta 281  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  27860507 gcctgacttttgcactcactgtaaaagtattggacataatgtaacatcttgtcggtggtta 27860447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 8224437 - 8224621
Alignment:
Q  15 caagaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcact 114  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  8224437 caagaatattagatggagagaaaattgtatgaaatagctagg-ctatcggaataccattgttaattgataatgttactaaaaacatattgtttagtcact 8224535  T
Q  115 atgccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtg 200  Q
    ||||||||||||||||| ||||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  8224536 atgccagggtcttggtgaatttagaacttaccgaaaacattttttatgaagttatggtggaatgggaaggttatgcattttcggtg 8224621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 196 - 398
Target Start/End: Original strand, 8225945 - 8226149
Alignment:
Q  196 cggtggaaatcgaatacaagggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatccnnnnnnngc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||    
T  8225945 cggtggaaattgaatacaagggactgcctgaattttgcactcactgtaaaactattggccataatgtaacatcttgccggtggttacatccaaaaaaagc 8226044  T
Q  296 acacaaaaaagagaagattcttcccgttgataagggg-aaaaactgaacattcctagagac-agccgttataggatgaaaagaaggataacccctccgac 393  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| || | || |  ||||||| |||||||||||| || || |||    
T  8226045 acacaaaagagagaagattcttcccgttgataaggggaaaaaactgaacattcgtagaaacaatccatgctaggatggaaagaaggataatccttctgac 8226144  T
Q  394 atagg 398  Q
    |||||    
T  8226145 atagg 8226149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 5073945 - 5074213
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||| |||| || ||||| |||||| |||| ||||    
T  5073945 gaatattggatggagagaaccttgtatgaaatagcgggggctatcgggactccgttgttaattgataatcttactaagaacatgttgtttggtcattatg 5074044  T
Q  118 ccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaaggg 217  Q
    ||| ||| ||| | || |||||| ||| |  |||||||||||||||| |||||||||||  |||||||||||||||| |||||||||| |||||| | ||    
T  5074045 ccaaggttttgttagacttagacgtttgtagaaacattttttatgaagttatggtggaacaggaaggttatgcattttcggtggaaattgaatacgatgg 5074144  T
Q  218 actgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatcc 286  Q
      ||||||| ||||||||||||||||||  |||||| |||||||||  || |||| |||||||||||||    
T  5074145 gttgcctgacttttgcactcactgtaaacatattggacataatgtattattttgctggtggttacatcc 5074213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 10177057 - 10177298
Alignment:
Q  43 atgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatgccagggtcttggtggatttagacct 142  Q
    |||| ||||| | |||||||  |||| ||||||| | | |||||||||| || |||| | | ||| | |||||||||||| | |||||||||||||||||    
T  10177057 atgagatagcagtggctatcaagacatcgttgttaaataataatgttactaagaacacactatttggacactatgccaggttgttggtggatttagacct 10177156  T
Q  143 ttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaagggactgcctgaattttgcactcactgt 242  Q
    ||    |    ||||||||||| |||||||||||| | |||||| |||||| || || || || |||||  |||| ||||  |||||||||||||| |||    
T  10177157 tttcagagtttttttttatgaagttatggtggaatagaaaggttttgcattccccgttgagattgaatatgaggg-ctgctggaattttgcactcattgt 10177255  T
Q  243 aaaagtattggccataatgtaacatcttgccggtggttacatc 285  Q
    ||||| |||| ||||||| ||||||||||||  ||||||||||    
T  10177256 aaaagcattgaccataatttaacatcttgcctatggttacatc 10177298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 4496 - 4767
Alignment:
Q  15 caagaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcact 114  Q
    |||||||||| |||||||||||| |||||| ||||||   || |||||||||| |||||  | |||||||||||||| || |||| ||||||| |||| |    
T  4496 caagaatattggatggagagaaccttgtattaaatagagtggtctatcgggactccgtttctaattgataatgttactaagaacaaattgtttggtcatt 4595  T
Q  115 atgccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaa 214  Q
    |||  || || |||||||| ||||||||||| |  ||||||||||||||| |||||||| || |||||||||||||||||||| ||| ||   ||||  |    
T  4596 atgttagagttttggtggacttagacctttccgggaacattttttatgaagttatggtgcaacgggaaggttatgcatttccgatggcaacgaaatagga 4695  T
Q  215 gggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatcc 286  Q
    ||| |||||||| |||||||||||||||||||||||||  ||||||||| ||||||  || |||||||||||    
T  4696 ggggctgcctgagttttgcactcactgtaaaagtattgcacataatgtatcatcttttcgatggttacatcc 4767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 38232609 - 38232766
Alignment:
Q  126 ttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaagggactgcctg 225  Q
    |||||||| || |||||||||   || || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||  | ||||    
T  38232609 ttggtggacttggacctttctcgcaatatcttttatgaaattatggtggaaagggaaggttatgcatttccggtggagattgaatgcaaggggttacctg 38232708  T
Q  226 aattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttaca 283  Q
    | |||||||| || || |||||||||||||||||||||| ||| ||||||||||||||    
T  38232709 acttttgcacgcattgcaaaagtattggccataatgtaatatcctgccggtggttaca 38232766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 25240073 - 25239945
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  25240073 gaatattggatggagagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25239974  T
Q  118 ccagggtcttggtggatttagacctttct 146  Q
    ||  |||||| ||||| ||||||||||||    
T  25239973 ccttggtctttgtggacttagacctttct 25239945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 25304226 - 25304098
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  25304226 gaatattggatggagagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25304127  T
Q  118 ccagggtcttggtggatttagacctttct 146  Q
    ||  |||||| ||||| ||||||||||||    
T  25304126 ccttggtctttgtggacttagacctttct 25304098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 25236504 - 25236389
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| ||||  |||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  25236504 gaatattcgatgatgagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25236405  T
Q  118 ccagggtcttggtgga 133  Q
    |||||||||| |||||    
T  25236404 ccagggtctttgtgga 25236389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 25300664 - 25300549
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| ||||  |||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  25300664 gaatattcgatgatgagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25300565  T
Q  118 ccagggtcttggtgga 133  Q
    |||||||||| |||||    
T  25300564 ccagggtctttgtgga 25300549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 25188355 - 25188228
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| | |||||||||||||||||||||||||  | ||||||||||||||||||||  | ||||||||||| || ||||  |||||| |||||||||    
T  25188355 gaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgttgttagtcgataatgttactaagaacaggttgtttggtcactatg 25188256  T
Q  118 ccagggtcttggtggatttagacctttc 145  Q
    ||| ||| || ||||| |||||||||||    
T  25188255 ccaaggtgtttgtggacttagacctttc 25188228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 25188218 - 25188113
Alignment:
Q  181 aaggttatgcatttccggtggaaatcgaatacaagggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggtt 280  Q
    |||||||||||||||| |  ||||| |||||| ||||||||||||| ||||||| ||| ||||||||||||||||||| ||||| ||||||  |||||||    
T  25188218 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccatagtgtaaaatcttgttggtggtt 25188119  T
Q  281 acatcc 286  Q
    ||||||    
T  25188118 acatcc 25188113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 25232174 - 25232073
Alignment:
Q  181 aaggttatgcatttccggtggaaatcgaatacaagggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggtt 280  Q
    |||||||||||||||| |  ||||| |||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||  |||||||    
T  25232174 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccataatgtaaaatcttgttggtggtt 25232075  T
Q  281 ac 282  Q
    ||    
T  25232074 ac 25232073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 25296332 - 25296231
Alignment:
Q  181 aaggttatgcatttccggtggaaatcgaatacaagggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggtt 280  Q
    |||||||||||||||| |  ||||| |||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||  |||||||    
T  25296332 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccataatgtaaaatcttgttggtggtt 25296233  T
Q  281 ac 282  Q
    ||    
T  25296232 ac 25296231  T

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Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 25232310 - 25232184
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| | |||||||||||||||||||||||||  | ||||||||||||||||| ||  | ||| ||||||| || ||||  |||||| |||||||||    
T  25232310 gaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgtttttagtcgat-atgttactaagaacaggttgtttggtcactatg 25232212  T
Q  118 ccagggtcttggtggatttagacctttc 145  Q
    ||| ||| || ||||| |||||||||||    
T  25232211 ccaaggtgtttgtggacttagacctttc 25232184  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 25296468 - 25296342
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacatattgtttagtcactatg 117  Q
    ||||||| | |||||||||||||||||||||||||  | ||||||||||||||||| ||  | ||| ||||||| || ||||  |||||| |||||||||    
T  25296468 gaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgtttttagtcgat-atgttactaagaacaggttgtttggtcactatg 25296370  T
Q  118 ccagggtcttggtggatttagacctttc 145  Q
    ||| ||| || ||||| |||||||||||    
T  25296369 ccaaggtgtttgtggacttagacctttc 25296342  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 38232517 - 38232590
Alignment:
Q  14 ccaagaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatg 87  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||| || || ||| | ||||||||||    
T  38232517 ccaagaatattggatggagagaaccttgtatgaaatagcaggggctatcggaactcctttgctaattgataatg 38232590  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 26789206 - 26789097
Alignment:
Q  153 attttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaagggactgcctgaattttgcactcactgtaaaagtattg 252  Q
    |||||||||||  | ||||| ||||| ||||||| ||||||||||||||  || || ||  |||||||| |||| || |||  || ||||||||  ||||    
T  26789206 attttttatgaggtcatggtagaatgtgaaggttttgcatttccggtggcgatagagtatgagggactgtctgatttctgccatcgctgtaaaaccattg 26789107  T
Q  253 gccataatgt 262  Q
    ||||||||||    
T  26789106 gccataatgt 26789097  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 21364142 - 21364206
Alignment:
Q  222 cctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttacatcc 286  Q
    ||||| |||||||| ||||| || ||||||||||| ||||| |  |||||||| |||||||||||    
T  21364142 cctgatttttgcacacactgcaagagtattggccacaatgttagttcttgccgttggttacatcc 21364206  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 34516382 - 34516602
Alignment:
Q  18 gaatattagatggagagaacattgtatgaaatagctggggctatcgggacaccgttgttgattgataatgttaccaaaaacata--ttgtttagtcacta 115  Q
    ||||||||||| |||||||| |||| | |||| ||  ||||| ||||||||||||| || ||| | ||||||||  |||||| |  |||||| | |||||    
T  34516382 gaatattagattgagagaactttgtttaaaatcgcaagggctgtcgggacaccgttattaattaagaatgttactgaaaacacaggttgtttggacacta 34516481  T
Q  116 tgccagggtcttggtggatttagacctttctgaaaacattttttatgaaattatggtggaatgggaaggttatgcatttccggtggaaatcgaatacaag 215  Q
    || || ||| ||| |||||||||| |||||  || |||||||||||||| | |||||||||   |||||||  ||||| |||||||| || |||||  ||    
T  34516482 tgtcaaggtattgatggatttagatctttccaaagacattttttatgaagtgatggtggaacacgaaggtttcgcattcccggtggagattgaatatgag 34516581  T
Q  216 ggactgcctgaattttgcact 236  Q
    || |||||  | |||||||||    
T  34516582 gggctgccgtatttttgcact 34516602  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 21805614 - 21805682
Alignment:
Q  78 attgataatgttaccaaaaacatattgtttagtcactatgccagggtcttggtggatttagacctttct 146  Q
    |||||||||||||| |||||   |||||| || ||||||||||| || |||||||||||||||||||||    
T  21805614 attgataatgttactaaaaatcgattgttcagacactatgccagagtgttggtggatttagacctttct 21805682  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 98491 - 98560
Alignment:
Q  214 agggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttaca 283  Q
    |||| ||||| |||||||||||||||||||| |||||||| || |||||| |||| || || ||||||||    
T  98491 agggtctgccggaattttgcactcactgtaagagtattggtcacaatgtatcatcatgtcgttggttaca 98560  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 16759 - 16690
Alignment:
Q  214 agggactgcctgaattttgcactcactgtaaaagtattggccataatgtaacatcttgccggtggttaca 283  Q
    |||| ||||| ||||||||||||||| |||| |||||||| || |||||| |||| || || ||||||||    
T  16759 agggtctgccggaattttgcactcaccgtaagagtattggtcacaatgtatcatcatgtcgttggttaca 16690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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