View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_low_12 (Length: 369)

Name: NF14121_low_12
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_low_12
NF14121_low_12
[»] chr1 (4 HSPs)
chr1 (128-364)||(33619355-33619606)
chr1 (321-364)||(28173141-28173184)
chr1 (128-208)||(31567915-31567995)
chr1 (128-176)||(33620294-33620342)
[»] chr5 (4 HSPs)
chr5 (128-364)||(41786486-41786737)
chr5 (128-193)||(42910027-42910092)
chr5 (128-176)||(41785749-41785797)
chr5 (128-177)||(13449939-13449988)
[»] chr7 (1 HSPs)
chr7 (6-86)||(6805066-6805149)
[»] chr8 (2 HSPs)
chr8 (128-216)||(10367007-10367095)
chr8 (126-174)||(10366038-10366086)
[»] chr6 (1 HSPs)
chr6 (125-211)||(35177298-35177384)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 364
Target Start/End: Original strand, 33619355 - 33619606
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagttnnnnnnnnnn 227  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              
T  33619355 ggtggcatttacaatgcacaagacacaaatttgtgcatgatacacaaatatggtttggaaggacagctggcagttgatcacctgctagttaaaaaactaa 33619454  T
Q  228 nnnnntcccaaatcatattttaatatattaatgcagaatatca-----nnnnnnnnctaattaattttccattttccaaatacacccatgctttgaaa-- 320  Q
         ||||||||||||||||||||||||||||||||||||||              |||||||||||||| ||| || |||||||  ||||||||||      
T  33619455 aaaaatcccaaatcatattttaatatattaatgcagaatatcagatatttgtttttttaattaattttccagttttcatatacacctctgctttgaaaaa 33619554  T
Q  321 --------atgcctctattttcttcatattttcagatatgcattcatctcac 364  Q
            ||||||||||||||||||||||||||||||||||||||| ||||    
T  33619555 caatctgtatgcctctattttcttcatattttcagatatgcattcatttcac 33619606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 28173141 - 28173184
Alignment:
Q  321 atgcctctattttcttcatattttcagatatgcattcatctcac 364  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  28173141 atgcctctattttcttcatattttcagatatgcattcatttcac 28173184  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 31567995 - 31567915
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcac 208  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||  ||  |||||||| |||| ||| |||||    
T  31567995 ggtggcatttacaatgcacaagacacaaatttgtgcatcatacacgaatatggcttataaggacagttggcggttcatcac 31567915  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 33620342 - 33620294
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaat 176  Q
    ||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  33620342 ggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaat 33620294  T

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Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 128 - 364
Target Start/End: Complemental strand, 41786737 - 41786486
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagttnnnnnnnnnn 227  Q
    ||||| ||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              
T  41786737 ggtggtatttacaatgcacaagacacaaatttatgcatgatacacaaatatggtttggaaggacagctggcagttgatcacctgctagttaaaaaactaa 41786638  T
Q  228 nnnnntcccaaatcatattttaatatattaatgcagaatatca-----nnnnnnnnctaattaattttccattttccaaatacacccatgctttgaaa-- 320  Q
         ||||||||||||||||||||||||||||||||||||||             ||||||||||||||| ||| || |||||||  ||||||||||      
T  41786637 aaaaatcccaaatcatattttaatatattaatgcagaatatcagatatttgtttctctaattaattttccagttttcatatacacctctgctttgaaaaa 41786538  T
Q  321 --------atgcctctattttcttcatattttcagatatgcattcatctcac 364  Q
            ||||||||||||||||||||||||||||||||||||||| ||||    
T  41786537 caatctgtatgcctctattttcttcatattttcagatatgcattcatttcac 41786486  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 42910092 - 42910027
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacag 193  Q
    |||||||||||  |||||||| |||||||||||||||  |||||||| |||| |||||||||||||    
T  42910092 ggtggcatttagcatgcacaaaacataaatttgtgcaccatacacaagtatggtttggaaggacag 42910027  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 41785749 - 41785797
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaat 176  Q
    ||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  41785749 ggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaat 41785797  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 13449939 - 13449988
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaata 177  Q
    |||||| |||| ||||||||||   |||||||||||||||||||||||||    
T  13449939 ggtggcgtttacaatgcacaagtattaaatttgtgcatgatacacaaata 13449988  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 6805149 - 6805066
Alignment:
Q  6 gaggtagtggctactgaaggtgaatattcgttgttt---atttacacggatactgttgtcttggatatatgaattttgtaatat 86  Q
    |||||| || |||||||||||||||||||||| |||   |||||||||||||||||| ||||||||||||||||||||||||||    
T  6805149 gaggtactgactactgaaggtgaatattcgtttttttttatttacacggatactgttatcttggatatatgaattttgtaatat 6805066  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 10367095 - 10367007
Alignment:
Q  128 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagt 216  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||| || |||  |||| ||||||||||||||||| |||||||||||||    
T  10367095 ggtggcatttacaatacacaagacacaaatttgtgcatgatacataagtattgtttgaaaggacagctggcagttcatcacctgctagt 10367007  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 10366038 - 10366086
Alignment:
Q  126 tcggtggcatttataatgcacaagacataaatttgtgcatgatacacaa 174  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  10366038 tcggtggcatttacaatgcacaagacacaaatttgtgcatcatacacaa 10366086  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 35177384 - 35177298
Alignment:
Q  125 ctcggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctg 211  Q
    ||||||||||||||  ||| |||||||||||||||||| || ||| |||| ||||||||||||| |||| |||| ||| || |||||    
T  35177384 ctcggtggcatttagcatgaacaagacataaatttgtgtatcatatacaagtatgatttggaagaacaggtggctgttaataacctg 35177298  T

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