View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_low_16 (Length: 291)
Name: NF14121_low_16
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 38184232 - 38183957
Alignment:
| Q |
16 |
cagatcaaactactaatgcaaagttaattgaagatttgtggaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaat |
115 |
Q |
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| T |
38184232 |
cagatcaaactactaatgcaaagttaattgaagatttgtggaagactgggttgagggtggaacgtgatgaggaagcaggtatagtgaaagctggggaaat |
38184133 |
T |
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| Q |
116 |
tatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaag |
215 |
Q |
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| T |
38184132 |
tatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagagtttggctagtgaagctatgaag |
38184033 |
T |
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| Q |
216 |
gaaggagggtcttcgaataagaatctgagcaaatttctagatgacattggatgtataagtgaaaattagttagcac |
291 |
Q |
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| T |
38184032 |
gaaggagggtcttcgaataagaatctgagcaaatttctagatgacattggctgtataagtgaaaattagttagcac |
38183957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 38179563 - 38179293
Alignment:
| Q |
16 |
cagatcaaactactaatgcaaagttaattgaagatttgtggaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaat |
115 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| | || |||||||||| |||||| |
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| T |
38179563 |
cagatcaaaccactaatgcaaagttaattgaagatgtgtggaagactggggtgaggatggaatgtgatgaggaag---ggatggtgaaagctgaggaaat |
38179467 |
T |
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| Q |
116 |
tatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaag |
215 |
Q |
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| T |
38179466 |
tagaaagtgttttgaagtggtgatggggaagggagaaaagggagaggaactaaggaggaatgctatgaaatggaaagatttagctagggcagctgtgaaa |
38179367 |
T |
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| Q |
216 |
gaaggagggtcttcgaataagaatctgagcaaatttctagatgacattggatgtataagtgaaaattagttagc |
289 |
Q |
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| T |
38179366 |
gaaggggggtcttcaaataagaatttgagcaactttctagatgatatttgatgtataggggaaaatcagttagc |
38179293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 38169749 - 38169481
Alignment:
| Q |
16 |
cagatcaaactactaatgcaaagttaattgaagatttgtggaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaat |
115 |
Q |
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| T |
38169749 |
cagatcaaaccactaatgcgaagttaattgaagatgtgtggaagactgggttgaggatggaacatgatgaggaag---ggatggtgaaagttgaggaaat |
38169653 |
T |
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| Q |
116 |
tatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaag |
215 |
Q |
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| T |
38169652 |
tagaaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaactaaggaggaatgctaagaaatggaaagatttggctagggcagctgtgaaa |
38169553 |
T |
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| Q |
216 |
gaaggagggtcttcgaataagaatctgagcaaatttctagatgacattggatgtataagtgaaaattagtta |
287 |
Q |
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| T |
38169552 |
gaaggagggtcttcaaataggaatttgaggagttatctaaatgatattgcatgtataactcaaatttagtta |
38169481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 35054293 - 35054426
Alignment:
| Q |
111 |
gaaattatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagcta |
210 |
Q |
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||||||| || ||||||||| ||||||||||||| ||||| |||||||||||| | ||||||| || |||||||||||| | |||||||| ||||| |
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| T |
35054293 |
gaaattaggaggtgtttggaggtggtgatggggagtggagagaaaggagaggaattgagaaggagtggaaagaaatggaaggagttggctagagaagcag |
35054392 |
T |
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| Q |
211 |
tgaaggaaggagggtcttcgaataagaatctgag |
244 |
Q |
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| T |
35054393 |
tgaaggaaggtggctcttcagaaaagaatctgag |
35054426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 35061031 - 35061111
Alignment:
| Q |
111 |
gaaattatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaag |
191 |
Q |
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| T |
35061031 |
gaaattaaaaagtgtttggaagaggtgatgggaagaggagagaaaggagaggaattgagaaagaatgcaatgaaatggaag |
35061111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 35054206 - 35054240
Alignment:
| Q |
27 |
actaatgcaaagttaattgaagatttgtggaagat |
61 |
Q |
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| T |
35054206 |
actaatgcaaagttaattgaagatgtgtggaagat |
35054240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 35060935 - 35060987
Alignment:
| Q |
18 |
gatcaaactactaatgcaaagttaattgaagatttgtggaagattggggtgag |
70 |
Q |
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| T |
35060935 |
gatcaaaagactaatgcaaaactaattgaagatgtgtggaagataggggtgag |
35060987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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