View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_low_18 (Length: 275)
Name: NF14121_low_18
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 2441677 - 2441429
Alignment:
| Q |
17 |
accactttgtaattatcattaaaagaatcatagccaaagccaaatgccatgtgagtgaaactccaatttggcttttgaaataggggaaactccttaattt |
116 |
Q |
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| T |
2441677 |
accactttgtaattatcattaaaagaatcatagccaaagccaaacgccatgtgagtgaaactccaatttggcttttgaaataggggaaactccttaattt |
2441578 |
T |
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| Q |
117 |
ttctaatggaagggttccataatatgacagactttttataaataccagcagtaaaacaaagtatgccattgcaggagccaacgaagcaatctacacataa |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441577 |
ttctaatggaagggttccataatatgacagagattttataaataccagcagtaaaacaaagtatgccattgcaggagccaacgaagcaatctacacataa |
2441478 |
T |
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| Q |
217 |
cctaggatgatctccatgaatattgtacggagaatactcatactctgtg |
265 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2441477 |
cctaggatgatctccatgaatattatacggagaatactcatactctgtg |
2441429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 3754262 - 3754219
Alignment:
| Q |
17 |
accactttgtaattatcattaaaagaatcatagccaaagccaaa |
60 |
Q |
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||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
3754262 |
accaccttgtaattatcgtttaaagaatcatagccaaagccaaa |
3754219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 12132750 - 12132708
Alignment:
| Q |
17 |
accactttgtaattatcattaaaagaatcatagccaaagccaa |
59 |
Q |
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||||| |||||||||||| || ||||||||||||||||||||| |
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| T |
12132750 |
accaccttgtaattatcagtacaagaatcatagccaaagccaa |
12132708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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