View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_low_23 (Length: 240)
Name: NF14121_low_23
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 15234738 - 15234528
Alignment:
| Q |
9 |
acatcatcaccaatcaaaacaccaaattaaccctcatattttacattgaaactccttttcaaacactcttcacatcctcaattgaaatggcttccacaac |
108 |
Q |
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| T |
15234738 |
acatcatcaccaatcaaaacaccaaattaaccctcatattttacattgaaactccttt-caaacactcttcacatcctcaattgaaatggcttccacaac |
15234640 |
T |
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| Q |
109 |
acccacgacaccaaaaaccatcactaaagaaatagttaccgaaatgggaaatatccttcgtatctttagcgacggttcaatagaaagaccaaaacaatcc |
208 |
Q |
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| T |
15234639 |
acccacgacaccaaaaaccatcactaaagaaatagttaccgaaatgggaaatatccttcgtatctttagcgacggttcaatagaaagaccaaaacaatcc |
15234540 |
T |
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| Q |
209 |
ccatttgctcct |
220 |
Q |
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|||||||||||| |
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| T |
15234539 |
ccatttgctcct |
15234528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 17472847 - 17472988
Alignment:
| Q |
72 |
cactcttcacatcctcaattgaaatggcttccacaacacccacgacaccaaaaaccatcactaaagaaatagttaccgaaatgggaaatatccttcgtat |
171 |
Q |
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||||||| |||||||| ||||||||||||||| ||||| || |||||| ||||| || |||||||||||||||||||| | |||| || ||||||| |
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| T |
17472847 |
cactcttttcatcctcagttgaaatggcttccaaaacacaaaccacaccagaaaccgtcgctaaagaaatagttaccgaatttggaacattcattcgtat |
17472946 |
T |
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| Q |
172 |
ctttagcgacggttcaatagaaagaccaaaacaatccccatt |
213 |
Q |
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| T |
17472947 |
ctttagcgacggttcagtggaaagaccatcacaatcaccatt |
17472988 |
T |
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