View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_low_25 (Length: 232)
Name: NF14121_low_25
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 15449856 - 15449644
Alignment:
| Q |
4 |
tttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataa |
103 |
Q |
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| T |
15449856 |
tttaccgcctgaaacttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataa |
15449757 |
T |
|
| Q |
104 |
ttgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaaataaaatttccagaag |
203 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449756 |
tttccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaaataaaatttccagaag |
15449657 |
T |
|
| Q |
204 |
gaattgcattctc |
216 |
Q |
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||||||||||||| |
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| T |
15449656 |
gaattgcattctc |
15449644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15488736 - 15488516
Alignment:
| Q |
1 |
ctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaata |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15488736 |
ctctttaccgcccgaagcttctaagggttgatatgaactcatctccttactatcaaccacatatgaatcctcttcccatgaactatagaccttgtgaata |
15488637 |
T |
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| Q |
101 |
taattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaa---ataaaatttc |
197 |
Q |
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| T |
15488636 |
taattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaaataataaaatttc |
15488537 |
T |
|
| Q |
198 |
cagaaggaattgcattctctg |
218 |
Q |
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| T |
15488536 |
cagaaggaattgcattctctg |
15488516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15430341 - 15430121
Alignment:
| Q |
1 |
ctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaata |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15430341 |
ctctttaccgcccgaagcttctaagggttgatatgaattcatctccttactatcaaccacatatgaatcctcttcccatgaactatagaccttgtgaata |
15430242 |
T |
|
| Q |
101 |
taattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaa---ataaaatttc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15430241 |
taattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaaataataaaatttc |
15430142 |
T |
|
| Q |
198 |
cagaaggaattgcattctctg |
218 |
Q |
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||||||||||||||||||||| |
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| T |
15430141 |
cagaaggaattgcattctctg |
15430121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16943430 - 16943213
Alignment:
| Q |
1 |
ctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaata |
100 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16943430 |
ctctttactgcctgaagcttctacgggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccttgaactatagaccttgtgaata |
16943331 |
T |
|
| Q |
101 |
taattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatctcacctaaatactcacaaataaaatttccag |
200 |
Q |
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|||| | ||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16943330 |
taatcgacaatattaaataattactcatcatcatcaactatcttcaaagcttcctcatcttcaataatctcacctatatactcacaaataaaatttccag |
16943231 |
T |
|
| Q |
201 |
aaggaattgcattctctg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
16943230 |
aaggaattgcattctctg |
16943213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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