View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14121_low_29 (Length: 223)
Name: NF14121_low_29
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14121_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 7215339 - 7215139
Alignment:
| Q |
10 |
aagaaaatcaaacttcttta--tcttcattgaatatgtgatctccatctttctctttctaaaattgaatcatatttatcattaacggtaaattaccccta |
107 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7215339 |
aagaacatcaaacttcttttcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatcatatttatcattaacggtaaattaccccga |
7215240 |
T |
|
| Q |
108 |
attcaacaagaggtaaaaatacttttgaaccattattgaacggttcaggcaaaaagtaaaaatactatcgaatgcttttatgaataagggtgagatcttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7215239 |
attcaacaagaggtaaaaatacttttgaaccattattgaacggttcagccaaaaagtaaaaatactattgaatgcttttatgaataagggtgagatcttt |
7215140 |
T |
|
| Q |
208 |
c |
208 |
Q |
| |
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| |
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| T |
7215139 |
c |
7215139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 7113597 - 7113541
Alignment:
| Q |
67 |
aaaattgaatcatatttatcattaacggtaaattacccctaattcaacaagaggtaa |
123 |
Q |
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|||||| |||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
7113597 |
aaaattaaatcttatttatcattaggagtaaattacacctaattcaacaagaggtaa |
7113541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 26236675 - 26236590
Alignment:
| Q |
31 |
cttcattgaatatgtgatctccatctttctctttctaaaattgaatcatatttatcattaacggtaaattacccctaattcaacaa |
116 |
Q |
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| T |
26236675 |
cttcatttaacatgtgatctgtatctttttcattctaaaattgaatcatatttatcattagagataaattacccgtaatttaacaa |
26236590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 54437881 - 54437954
Alignment:
| Q |
50 |
tccatctttctctttctaaaattgaatcatatttatcattaacggtaaattacccctaattcaacaagaggtaa |
123 |
Q |
| |
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||||||||| || || |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
54437881 |
tccatctttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaacaaggggtaa |
54437954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 39341287 - 39341336
Alignment:
| Q |
63 |
ttctaaaattgaatcatatttatcattaacggtaaattacccctaattca |
112 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
39341287 |
ttctaaaattgaatcttatttatcattagaggtaaattacccctaattca |
39341336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 22050950 - 22050989
Alignment:
| Q |
73 |
gaatcatatttatcattaacggtaaattacccctaattca |
112 |
Q |
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| T |
22050950 |
gaatcatatttatcattaagggtaaattacccccaattca |
22050989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 8448068 - 8448018
Alignment:
| Q |
63 |
ttctaaaattgaatcatatttatcattaacggtaaattacccctaattcaa |
113 |
Q |
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||||||||| ||||||||||||||||| | ||||||||| |||| |||||| |
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| T |
8448068 |
ttctaaaatcgaatcatatttatcatttaaggtaaattatcccttattcaa |
8448018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 3367839 - 3367911
Alignment:
| Q |
32 |
ttcattgaatatgtgatctccatctttctctttctaaaattgaatcatatttatcattaacggtaaattaccc |
104 |
Q |
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|||||| || ||||||||||||||| | || ||| | |||| ||||||||||||||||| ||||||||||| |
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| T |
3367839 |
ttcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcattaaaagtaaattaccc |
3367911 |
T |
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